Click here to switch to the map view.

The map label for this gene is 54294558

Identifier: 54294558

GI number: 54294558

Start: 1818069

End: 1820174

Strand: Reverse

Name: 54294558

Synonym: lpl1634

Alternate gene names: NA

Gene position: 1820174-1818069 (Counterclockwise)

Preceding gene: 54294561

Following gene: 54294557

Centisome position: 54.4

GC content: 38.22

Gene sequence:

>2106_bases
ATGATTGACTATCTTCCTCAATTACAGGCCATGGGATTTAATGCTGTATGGATAAATCCTGTACAAACAGCAGGGGATGT
TCAGGGTTTATTTAAGCGTGATAAGACAATTGGCGTCAGAGCTTATAATGAGGTGACAAGAAGTCTATATGCTATGACAG
ATTGTGATTTGATAAGTCCTTATTTTAACCCGCTCCCTCCCAATGTTGATCCTAAGTTGAAAAAGCAGCTTGATATGGAA
GCAATGCAGAAGTTCACATCAGAAGCCCGCAATAATGGTTTGGTACCGATGTTTGATTTGGTTTTAAATCACGTTGCCGC
CGATTCACGACACAGAAAAGAACATCCTGAATGGTTTCAAAAGGATGTCCATCCTGATTTTAAGGATGCTATCGCGTTTG
ACTACAGTGACCCTCAAATCCGAGATGAAATTATTGAACAATTTTGGAAGCCTTATATTTATAAGTACATGATTGATTAT
GGCTTTGAGGGTGTTCGCATTGATGCTGTAGGCTATTTAAATCCAGAATTACGCAAACAAATTTATGCTTATATTTATGA
TCTTGCGGAGCAGTTTAATAAACCTAAACCCGTTATATTGGATGAACTTCTTTTCAGTGGGAGTCAGAAGCTTACCGATG
TGGTTGATGGTTTGTTGCTTCCAGAAAAAGGGCCAACCCATATTACTCGCGGTACCTATTATGCGCAAAGAGATGGTTAT
GGTGGTTTGCCCGGATGGTGTAAGGAGGAGGAGGGAGTTAAGGCTCAAGTAGTATTCCTGGATAAACAAAAGAAATTGCA
TCCCCATGCCAAAGGCGGATGTATTGCTTTCTCCGGTAATCATGATCATAACTCCTTAGCCATGACAATATTGGAAGAAA
TGGCAGAACATCGTTTGGCAAATCATCACACTTTGCACGGCGCGCAAGAAAAATTTAAACATGAAAGGAGCTATGATTAT
GACGAAGCTTTAGAGTCAGTCCTGCGCTATTCTTTTGTGAAAGACATTCAAAACGAGATTCTAAGCGGTAATGAATCAAC
AATTAAAGAAGTAGAAACAAGAATGCGTGAAAAAATAGCTTTCTGTGCTTTAACATCAAGCGGCGGGTGGTATGCCCTAT
CGGGTGATGAAACAGGTGATTTATTGGCAAAACCTGTATTCAGAAGGGTTCACGCTCTGGACCAAACCTATTATGCACAA
CGTACTCATATAATCTTTGATAAAAAATATCCCGACAACAAAGTAGCTATGGAGGTATTAACCGAAATGGCTATAGAGAA
TATCCAAAAAGAAAAAGCTGGAAGCATCTATAACAGTTTACAGCATGATAAACAATCGCAAGAGCGATTGCTCGTTCCTT
ATCTGGAGACTTTGCAAAATCAAATTAATTGTGGCGATACAGTTGTTTGCAAAGCATTCCAAGAAAAACTTGCCCAGAGA
AATATAACGATTGGTTTTACAGACGAAAATTATAGTCCGGATCCCAGAACACCTCAAAATGGTTGGAACGGCCAACATGA
TATGAGGAAATTTATGTTTGAAATCAATAATATATTAAGCTCATTGCCGAGTTCCAATATGGGGTTTTGGAGTGAAGTTA
TCCCAATCCAGTCAAAACCAGGGTTGCTTGCAGTAGTACGTAAAAATGGGCTAGGCTTAAGTTCTGATACTGATATTGCG
ATCGTTAATATGGATCCAAGTCAAAAAGTCGAGTTAACAAGGGACGATATTCATCAATTAGCCTGTAATTTCCAGAAACG
AGTAATTTCTGAATATACTTATTACAATGATGGTAAAGACAAACAGTATAATTGGCATACAAATAATCCTGATTTTAATA
TGGCTTATCATACAGTGATGTCGTGTATCGAAGCCAAAAGGATACATGTTGATAATTCGATTAAAACTAATTTCCCTGTT
CACTCAGCAAATCCCTATGGCCTGTTTAGTAAAAAACAGTCAACCAAAATGAGCATTACCAAGATGGAGAAAATGACTGA
GGAAGATACCACTCTAATTGAAAAAGGGGTTGGCGATCAGGAAGTTACTCCAGTTAATGATCAACAAAATCAAATTCCAA
TAATAACAGTGGACATAAAGCATTAA

Upstream 100 bases:

>100_bases
AGTCAATAAAACAGAACGTGAAGAAAGTGTAATCCTGGATGGTAATGGGATTTTACGTTGTTATAACATGTTTCCTACTC
AATTTGGAAGCATAGAGGAA

Downstream 100 bases:

>100_bases
CAGAAGGGATGAGAGTCTTAATTTCTTGCCCTTTATCAATGATAATAAATTCTTATTGCTCCGGTTAGCAGAGTCGAGGA
AGCGATTGATTATGAAGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 701; Mature: 701

Protein sequence:

>701_residues
MIDYLPQLQAMGFNAVWINPVQTAGDVQGLFKRDKTIGVRAYNEVTRSLYAMTDCDLISPYFNPLPPNVDPKLKKQLDME
AMQKFTSEARNNGLVPMFDLVLNHVAADSRHRKEHPEWFQKDVHPDFKDAIAFDYSDPQIRDEIIEQFWKPYIYKYMIDY
GFEGVRIDAVGYLNPELRKQIYAYIYDLAEQFNKPKPVILDELLFSGSQKLTDVVDGLLLPEKGPTHITRGTYYAQRDGY
GGLPGWCKEEEGVKAQVVFLDKQKKLHPHAKGGCIAFSGNHDHNSLAMTILEEMAEHRLANHHTLHGAQEKFKHERSYDY
DEALESVLRYSFVKDIQNEILSGNESTIKEVETRMREKIAFCALTSSGGWYALSGDETGDLLAKPVFRRVHALDQTYYAQ
RTHIIFDKKYPDNKVAMEVLTEMAIENIQKEKAGSIYNSLQHDKQSQERLLVPYLETLQNQINCGDTVVCKAFQEKLAQR
NITIGFTDENYSPDPRTPQNGWNGQHDMRKFMFEINNILSSLPSSNMGFWSEVIPIQSKPGLLAVVRKNGLGLSSDTDIA
IVNMDPSQKVELTRDDIHQLACNFQKRVISEYTYYNDGKDKQYNWHTNNPDFNMAYHTVMSCIEAKRIHVDNSIKTNFPV
HSANPYGLFSKKQSTKMSITKMEKMTEEDTTLIEKGVGDQEVTPVNDQQNQIPIITVDIKH

Sequences:

>Translated_701_residues
MIDYLPQLQAMGFNAVWINPVQTAGDVQGLFKRDKTIGVRAYNEVTRSLYAMTDCDLISPYFNPLPPNVDPKLKKQLDME
AMQKFTSEARNNGLVPMFDLVLNHVAADSRHRKEHPEWFQKDVHPDFKDAIAFDYSDPQIRDEIIEQFWKPYIYKYMIDY
GFEGVRIDAVGYLNPELRKQIYAYIYDLAEQFNKPKPVILDELLFSGSQKLTDVVDGLLLPEKGPTHITRGTYYAQRDGY
GGLPGWCKEEEGVKAQVVFLDKQKKLHPHAKGGCIAFSGNHDHNSLAMTILEEMAEHRLANHHTLHGAQEKFKHERSYDY
DEALESVLRYSFVKDIQNEILSGNESTIKEVETRMREKIAFCALTSSGGWYALSGDETGDLLAKPVFRRVHALDQTYYAQ
RTHIIFDKKYPDNKVAMEVLTEMAIENIQKEKAGSIYNSLQHDKQSQERLLVPYLETLQNQINCGDTVVCKAFQEKLAQR
NITIGFTDENYSPDPRTPQNGWNGQHDMRKFMFEINNILSSLPSSNMGFWSEVIPIQSKPGLLAVVRKNGLGLSSDTDIA
IVNMDPSQKVELTRDDIHQLACNFQKRVISEYTYYNDGKDKQYNWHTNNPDFNMAYHTVMSCIEAKRIHVDNSIKTNFPV
HSANPYGLFSKKQSTKMSITKMEKMTEEDTTLIEKGVGDQEVTPVNDQQNQIPIITVDIKH
>Mature_701_residues
MIDYLPQLQAMGFNAVWINPVQTAGDVQGLFKRDKTIGVRAYNEVTRSLYAMTDCDLISPYFNPLPPNVDPKLKKQLDME
AMQKFTSEARNNGLVPMFDLVLNHVAADSRHRKEHPEWFQKDVHPDFKDAIAFDYSDPQIRDEIIEQFWKPYIYKYMIDY
GFEGVRIDAVGYLNPELRKQIYAYIYDLAEQFNKPKPVILDELLFSGSQKLTDVVDGLLLPEKGPTHITRGTYYAQRDGY
GGLPGWCKEEEGVKAQVVFLDKQKKLHPHAKGGCIAFSGNHDHNSLAMTILEEMAEHRLANHHTLHGAQEKFKHERSYDY
DEALESVLRYSFVKDIQNEILSGNESTIKEVETRMREKIAFCALTSSGGWYALSGDETGDLLAKPVFRRVHALDQTYYAQ
RTHIIFDKKYPDNKVAMEVLTEMAIENIQKEKAGSIYNSLQHDKQSQERLLVPYLETLQNQINCGDTVVCKAFQEKLAQR
NITIGFTDENYSPDPRTPQNGWNGQHDMRKFMFEINNILSSLPSSNMGFWSEVIPIQSKPGLLAVVRKNGLGLSSDTDIA
IVNMDPSQKVELTRDDIHQLACNFQKRVISEYTYYNDGKDKQYNWHTNNPDFNMAYHTVMSCIEAKRIHVDNSIKTNFPV
HSANPYGLFSKKQSTKMSITKMEKMTEEDTTLIEKGVGDQEVTPVNDQQNQIPIITVDIKH

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80359; Mature: 80359

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYLPQLQAMGFNAVWINPVQTAGDVQGLFKRDKTIGVRAYNEVTRSLYAMTDCDLISP
CCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHCC
YFNPLPPNVDPKLKKQLDMEAMQKFTSEARNNGLVPMFDLVLNHVAADSRHRKEHPEWFQ
CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCHHHHH
KDVHPDFKDAIAFDYSDPQIRDEIIEQFWKPYIYKYMIDYGFEGVRIDAVGYLNPELRKQ
HHCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
IYAYIYDLAEQFNKPKPVILDELLFSGSQKLTDVVDGLLLPEKGPTHITRGTYYAQRDGY
HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECCCC
GGLPGWCKEEEGVKAQVVFLDKQKKLHPHAKGGCIAFSGNHDHNSLAMTILEEMAEHRLA
CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH
NHHTLHGAQEKFKHERSYDYDEALESVLRYSFVKDIQNEILSGNESTIKEVETRMREKIA
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE
FCALTSSGGWYALSGDETGDLLAKPVFRRVHALDQTYYAQRTHIIFDKKYPDNKVAMEVL
EEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
TEMAIENIQKEKAGSIYNSLQHDKQSQERLLVPYLETLQNQINCGDTVVCKAFQEKLAQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
NITIGFTDENYSPDPRTPQNGWNGQHDMRKFMFEINNILSSLPSSNMGFWSEVIPIQSKP
CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
GLLAVVRKNGLGLSSDTDIAIVNMDPSQKVELTRDDIHQLACNFQKRVISEYTYYNDGKD
CEEEEEECCCCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KQYNWHTNNPDFNMAYHTVMSCIEAKRIHVDNSIKTNFPVHSANPYGLFSKKQSTKMSIT
CCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
KMEKMTEEDTTLIEKGVGDQEVTPVNDQQNQIPIITVDIKH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MIDYLPQLQAMGFNAVWINPVQTAGDVQGLFKRDKTIGVRAYNEVTRSLYAMTDCDLISP
CCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHCC
YFNPLPPNVDPKLKKQLDMEAMQKFTSEARNNGLVPMFDLVLNHVAADSRHRKEHPEWFQ
CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCHHHHH
KDVHPDFKDAIAFDYSDPQIRDEIIEQFWKPYIYKYMIDYGFEGVRIDAVGYLNPELRKQ
HHCCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
IYAYIYDLAEQFNKPKPVILDELLFSGSQKLTDVVDGLLLPEKGPTHITRGTYYAQRDGY
HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECCCC
GGLPGWCKEEEGVKAQVVFLDKQKKLHPHAKGGCIAFSGNHDHNSLAMTILEEMAEHRLA
CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH
NHHTLHGAQEKFKHERSYDYDEALESVLRYSFVKDIQNEILSGNESTIKEVETRMREKIA
CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE
FCALTSSGGWYALSGDETGDLLAKPVFRRVHALDQTYYAQRTHIIFDKKYPDNKVAMEVL
EEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
TEMAIENIQKEKAGSIYNSLQHDKQSQERLLVPYLETLQNQINCGDTVVCKAFQEKLAQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
NITIGFTDENYSPDPRTPQNGWNGQHDMRKFMFEINNILSSLPSSNMGFWSEVIPIQSKP
CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCC
GLLAVVRKNGLGLSSDTDIAIVNMDPSQKVELTRDDIHQLACNFQKRVISEYTYYNDGKD
CEEEEEECCCCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCC
KQYNWHTNNPDFNMAYHTVMSCIEAKRIHVDNSIKTNFPVHSANPYGLFSKKQSTKMSIT
CCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
KMEKMTEEDTTLIEKGVGDQEVTPVNDQQNQIPIITVDIKH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA