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The map label for this gene is ygdQ [H]

Identifier: 54294420

GI number: 54294420

Start: 1657475

End: 1658206

Strand: Direct

Name: ygdQ [H]

Synonym: lpl1489

Alternate gene names: 54294420

Gene position: 1657475-1658206 (Clockwise)

Preceding gene: 54294416

Following gene: 54294421

Centisome position: 49.54

GC content: 35.52

Gene sequence:

>732_bases
ATGGATTTTATTGATATAGGCCTTAGTTTAACTGCTTTGATTATTCTTGAAGTTGTTCTTGGAATAGATAATCTGGTTAT
TCTATCGATTCTTACAGAAAAATTACCACGTGAAAAAAGAAAAAAGGCGAGAAGATGGGGCTTAACATTTGCCTGGATGA
CACGACTTCTTTTACTAGGCTCAGCAGTTTTTTTAGTTAAGTTAGTAAAACCAATTCTGACAATAGGCAGTCTGGTATTT
TCTGCTCGTGATCTGTTCCTCATATTAGGAGGTGCTTTTTTAATTTGGAAGTCAACTGATGAAATTCATCAGGACGTTAT
GAATGAACCATTAATGGAACCTGTTTCAAAAAATGTTTCTTCATCTGCCACTTTCAGAGGAGTTGTTATTCAAATCGCAT
TGCTTGATATTATATTTTCACTAGATAGCGTTCTCACGGCCGTAGGACTAACATCTCATTTTATGGTCATGGCAGTGGCA
ATTACCATCGCAATTATCATTATGATTTGGGCGAGTGAGCCTGTAAGTAAATTTATTAGCGAACATCCTACCATTAAAAT
GCTGGCACTTAGTTATTTGATTTTAATAGGAACCGTTTTGGTAGCTGATGGTTTTGAATTCCATGTGCCCAGGGGATACT
TGTATTTTGCTATGGGCTTTTCATTAGGAGTTGAGTCACTCAACTTGATTAAAAATGAACGTGTAAAGCGTAAAAAATTA
AAAAGAGAGTAA

Upstream 100 bases:

>100_bases
CACCAAGCAATTATAACGAAGCAAATGATCAAAGTGAATCATTTACCTTTACAAATATTTTAGAGAAAATAATATATCTT
GCATTTTATTAGGATAATAA

Downstream 100 bases:

>100_bases
GTATGTTATTTGTTAAAGCTTTTCATATTATCGCCTTGGTAGCCTGGTTCGCGGGGTTGTTTTATTTACCACGGCTCTAC
GTATACCACGCTGAATCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MDFIDIGLSLTALIILEVVLGIDNLVILSILTEKLPREKRKKARRWGLTFAWMTRLLLLGSAVFLVKLVKPILTIGSLVF
SARDLFLILGGAFLIWKSTDEIHQDVMNEPLMEPVSKNVSSSATFRGVVIQIALLDIIFSLDSVLTAVGLTSHFMVMAVA
ITIAIIIMIWASEPVSKFISEHPTIKMLALSYLILIGTVLVADGFEFHVPRGYLYFAMGFSLGVESLNLIKNERVKRKKL
KRE

Sequences:

>Translated_243_residues
MDFIDIGLSLTALIILEVVLGIDNLVILSILTEKLPREKRKKARRWGLTFAWMTRLLLLGSAVFLVKLVKPILTIGSLVF
SARDLFLILGGAFLIWKSTDEIHQDVMNEPLMEPVSKNVSSSATFRGVVIQIALLDIIFSLDSVLTAVGLTSHFMVMAVA
ITIAIIIMIWASEPVSKFISEHPTIKMLALSYLILIGTVLVADGFEFHVPRGYLYFAMGFSLGVESLNLIKNERVKRKKL
KRE
>Mature_243_residues
MDFIDIGLSLTALIILEVVLGIDNLVILSILTEKLPREKRKKARRWGLTFAWMTRLLLLGSAVFLVKLVKPILTIGSLVF
SARDLFLILGGAFLIWKSTDEIHQDVMNEPLMEPVSKNVSSSATFRGVVIQIALLDIIFSLDSVLTAVGLTSHFMVMAVA
ITIAIIIMIWASEPVSKFISEHPTIKMLALSYLILIGTVLVADGFEFHVPRGYLYFAMGFSLGVESLNLIKNERVKRKKL
KRE

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0053 family [H]

Homologues:

Organism=Escherichia coli, GI1789197, Length=227, Percent_Identity=51.1013215859031, Blast_Score=208, Evalue=3e-55,
Organism=Escherichia coli, GI1788119, Length=231, Percent_Identity=45.4545454545455, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI87082033, Length=219, Percent_Identity=49.7716894977169, Blast_Score=194, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005496 [H]

Pfam domain/function: PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 27115; Mature: 27115

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFIDIGLSLTALIILEVVLGIDNLVILSILTEKLPREKRKKARRWGLTFAWMTRLLLLG
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
SAVFLVKLVKPILTIGSLVFSARDLFLILGGAFLIWKSTDEIHQDVMNEPLMEPVSKNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHCCHHHHHHHCCCC
SSATFRGVVIQIALLDIIFSLDSVLTAVGLTSHFMVMAVAITIAIIIMIWASEPVSKFIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
EHPTIKMLALSYLILIGTVLVADGFEFHVPRGYLYFAMGFSLGVESLNLIKNERVKRKKL
CCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRE
CCC
>Mature Secondary Structure
MDFIDIGLSLTALIILEVVLGIDNLVILSILTEKLPREKRKKARRWGLTFAWMTRLLLLG
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
SAVFLVKLVKPILTIGSLVFSARDLFLILGGAFLIWKSTDEIHQDVMNEPLMEPVSKNVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHCCHHHHHHHCCCC
SSATFRGVVIQIALLDIIFSLDSVLTAVGLTSHFMVMAVAITIAIIIMIWASEPVSKFIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
EHPTIKMLALSYLILIGTVLVADGFEFHVPRGYLYFAMGFSLGVESLNLIKNERVKRKKL
CCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]