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The map label for this gene is 54294421

Identifier: 54294421

GI number: 54294421

Start: 1658209

End: 1658631

Strand: Direct

Name: 54294421

Synonym: lpl1490

Alternate gene names: NA

Gene position: 1658209-1658631 (Clockwise)

Preceding gene: 54294420

Following gene: 54294423

Centisome position: 49.56

GC content: 37.59

Gene sequence:

>423_bases
ATGTTATTTGTTAAAGCTTTTCATATTATCGCCTTGGTAGCCTGGTTCGCGGGGTTGTTTTATTTACCACGGCTCTACGT
ATACCACGCTGAATCACTAGATAAAATCAGCGTTGATCGGTTTAAAATAATGGAAAGAAGATTATATTACGGAATTACAT
GGCCTGCAGCTCTTGCAACCACATTTCTTGGGTTGTGGCTATTCACTTACAATTTATCTTATTATCTTAAAGCAGGGTGG
ATGCACATGAAGCTTGCATTGGTTTTGCTCTTATGGGTATATCATTTAACTTGCGGACACTTCCTTAAATCATTCGCCCT
TGGAAAGAATACAAGAAGTTCTCGTTTTTATCGATTTTTTAATGAAATGCCTACATTGCTGCTGGTAGGCATTGTTTTGC
TGGTGGTTGTAAAACCATTTTAA

Upstream 100 bases:

>100_bases
GATACTTGTATTTTGCTATGGGCTTTTCATTAGGAGTTGAGTCACTCAACTTGATTAAAAATGAACGTGTAAAGCGTAAA
AAATTAAAAAGAGAGTAAGT

Downstream 100 bases:

>100_bases
TCCATTTCGACCATTTCGAAATCTTCTTTTCCAGCGCCACAATCAGGACAAAACCAGTTTTCAGGAACATCTTCCCATCG
TGTGCCTGGCTCAATACCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MLFVKAFHIIALVAWFAGLFYLPRLYVYHAESLDKISVDRFKIMERRLYYGITWPAALATTFLGLWLFTYNLSYYLKAGW
MHMKLALVLLLWVYHLTCGHFLKSFALGKNTRSSRFYRFFNEMPTLLLVGIVLLVVVKPF

Sequences:

>Translated_140_residues
MLFVKAFHIIALVAWFAGLFYLPRLYVYHAESLDKISVDRFKIMERRLYYGITWPAALATTFLGLWLFTYNLSYYLKAGW
MHMKLALVLLLWVYHLTCGHFLKSFALGKNTRSSRFYRFFNEMPTLLLVGIVLLVVVKPF
>Mature_140_residues
MLFVKAFHIIALVAWFAGLFYLPRLYVYHAESLDKISVDRFKIMERRLYYGITWPAALATTFLGLWLFTYNLSYYLKAGW
MHMKLALVLLLWVYHLTCGHFLKSFALGKNTRSSRFYRFFNEMPTLLLVGIVLLVVVKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 16529; Mature: 16529

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFVKAFHIIALVAWFAGLFYLPRLYVYHAESLDKISVDRFKIMERRLYYGITWPAALAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
TFLGLWLFTYNLSYYLKAGWMHMKLALVLLLWVYHLTCGHFLKSFALGKNTRSSRFYRFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NEMPTLLLVGIVLLVVVKPF
HHCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLFVKAFHIIALVAWFAGLFYLPRLYVYHAESLDKISVDRFKIMERRLYYGITWPAALAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
TFLGLWLFTYNLSYYLKAGWMHMKLALVLLLWVYHLTCGHFLKSFALGKNTRSSRFYRFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NEMPTLLLVGIVLLVVVKPF
HHCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]