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The map label for this gene is ygjR [C]

Identifier: 54294210

GI number: 54294210

Start: 1420941

End: 1421969

Strand: Direct

Name: ygjR [C]

Synonym: lpl1275

Alternate gene names: 54294210

Gene position: 1420941-1421969 (Clockwise)

Preceding gene: 54294207

Following gene: 54294216

Centisome position: 42.47

GC content: 36.93

Gene sequence:

>1029_bases
ATGAATAATGCGACAATAAAATGGGGAATTTTAGGAACAAGTTTTATCTCTGAAGTGATGGCTAATGCAATTCAGGAATC
AAAAACCAGCGAGCTTGTTGCTATTGGGAGTCGAACAAGGGAGATAGCCAAACGATTTTCTGAAAAATTCGCTATTCCAA
AATTTTATGACAATTATCAATCATTAATTCTCGATAGTGATATAGATGTGGTTTATATAGGGTTGCCTAATCATCTGCAT
AAAGAATGGATTATTCGTTGTGCGCGGGCAGGAAAAAATATTTTGTGTGAAAAACCTTTTGTTATTGGTATAGAAGAAAT
CCATGAGGTTATTTCAGTAATTGAGAGAACAAATATTTTTTGTATGGAAGCCCTAATGTACCGATATCACCCCTTTATAA
AAAAATTACAAGAGGTCATTCAAAGCAACACAATAGGTAAGATAAAGTTGTATAATGCGACATACACAGCAAACATTGCA
GAAATAGCCAATCCTGTTGCGGGAGGAAGTATACGTAATCTCGGATGTTACCCAATTTCCTTAGTGCGGCTGCTCGCTAA
CGCAGAGCCAATCGAAATCTGTGGTATTGGAAGAATGAACTCCAGGAACAATACTGATAGTCAAGCCAGCGTTCTTTTAA
AATTTGAAGACGATTCAATTGCAGCAGTTTCCACTGCCGATGATATTGAAATGCATTGGCAATTTGAGGTTTATGGAACA
AAAGGCCATTTAAAAGTAGAAACGAATCCCTGGTTGCCTGGCTGTGAGGGTAACAAAATTTATATCTCTCTCAATACTGA
GTCAACACCCAGAGAAATAAGCGTGAAAGCAGAAAAGTCACTTTATACCTATCAAATAGATTTTATCAATGAGCAAGTAT
TGAAAGGGGATTCCAGACAATTTAGCAAGACGTCTTTATTAGATAGCATGGGAAATACAATCGTTCTGGAAACCTGGCTA
AAACAAATACTCCCTTCAAAACCAAGCCTTGAATTATCCAGATTAAAAGACAGGCTGCCTCATGCATAA

Upstream 100 bases:

>100_bases
TTAGAGCAGGAAATTTAAGTGGTTTTTACTGCTATGGTTTTACTCGTGTCATTTATGCGTTTTAATATACAGTCAGCAAT
TTTTTAGCCGTAAGGAATAT

Downstream 100 bases:

>100_bases
GCAAAATGGTTCTGTTGATACTAGTCAAATTTTCCGAGAAGAGAGTAATCTGTTTTTCCTTCGCGCCAGATACCATCCCA
ATTGACAGGTGGATTAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MNNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTREIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCARAGKNILCEKPFVIGIEEIHEVISVIERTNIFCMEALMYRYHPFIKKLQEVIQSNTIGKIKLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEICGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVETNPWLPGCEGNKIYISLNTESTPREISVKAEKSLYTYQIDFINEQVLKGDSRQFSKTSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA

Sequences:

>Translated_342_residues
MNNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTREIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCARAGKNILCEKPFVIGIEEIHEVISVIERTNIFCMEALMYRYHPFIKKLQEVIQSNTIGKIKLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEICGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVETNPWLPGCEGNKIYISLNTESTPREISVKAEKSLYTYQIDFINEQVLKGDSRQFSKTSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA
>Mature_342_residues
MNNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTREIAKRFSEKFAIPKFYDNYQSLILDSDIDVVYIGLPNHLH
KEWIIRCARAGKNILCEKPFVIGIEEIHEVISVIERTNIFCMEALMYRYHPFIKKLQEVIQSNTIGKIKLYNATYTANIA
EIANPVAGGSIRNLGCYPISLVRLLANAEPIEICGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
KGHLKVETNPWLPGCEGNKIYISLNTESTPREISVKAEKSLYTYQIDFINEQVLKGDSRQFSKTSLLDSMGNTIVLETWL
KQILPSKPSLELSRLKDRLPHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=256, Percent_Identity=28.125, Blast_Score=130, Evalue=2e-30,
Organism=Escherichia coli, GI145693182, Length=228, Percent_Identity=24.5614035087719, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24581115, Length=258, Percent_Identity=27.5193798449612, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24581117, Length=254, Percent_Identity=26.7716535433071, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24584727, Length=251, Percent_Identity=24.7011952191235, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38579; Mature: 38579

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTREIAKRFSEKFAIPKFYDNYQ
CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCCHHHHCHH
SLILDSDIDVVYIGLPNHLHKEWIIRCARAGKNILCEKPFVIGIEEIHEVISVIERTNIF
HEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCCEECHHHHHHHHHHHHHCCHH
CMEALMYRYHPFIKKLQEVIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPIS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCHHHHCCCCCCCCCCCCCCHHHH
LVRLLANAEPIEICGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
HHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEEEEC
KGHLKVETNPWLPGCEGNKIYISLNTESTPREISVKAEKSLYTYQIDFINEQVLKGDSRQ
CCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEEEHHHHHHCCCCCH
FSKTSLLDSMGNTIVLETWLKQILPSKPSLELSRLKDRLPHA
HHHHHHHHHHCCEEEHHHHHHHHCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MNNATIKWGILGTSFISEVMANAIQESKTSELVAIGSRTREIAKRFSEKFAIPKFYDNYQ
CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCCCHHHHCHH
SLILDSDIDVVYIGLPNHLHKEWIIRCARAGKNILCEKPFVIGIEEIHEVISVIERTNIF
HEEEECCCCEEEECCCCHHHHHHHHHHHHCCCCCEECCCCEECHHHHHHHHHHHHHCCHH
CMEALMYRYHPFIKKLQEVIQSNTIGKIKLYNATYTANIAEIANPVAGGSIRNLGCYPIS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEECCHHHHCCCCCCCCCCCCCCHHHH
LVRLLANAEPIEICGIGRMNSRNNTDSQASVLLKFEDDSIAAVSTADDIEMHWQFEVYGT
HHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEEEEEC
KGHLKVETNPWLPGCEGNKIYISLNTESTPREISVKAEKSLYTYQIDFINEQVLKGDSRQ
CCEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEEEEHHHHHHCCCCCH
FSKTSLLDSMGNTIVLETWLKQILPSKPSLELSRLKDRLPHA
HHHHHHHHHHCCEEEHHHHHHHHCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]