Click here to switch to the map view.

The map label for this gene is 54293936

Identifier: 54293936

GI number: 54293936

Start: 1121580

End: 1122821

Strand: Reverse

Name: 54293936

Synonym: lpl0992

Alternate gene names: NA

Gene position: 1122821-1121580 (Counterclockwise)

Preceding gene: 54293940

Following gene: 54293930

Centisome position: 33.56

GC content: 40.66

Gene sequence:

>1242_bases
ATGCGCTATATACTGCCAGCAGGAGCTCTAACCAGCCTTAACTTTTTACGCGATGACTATCAATCAGAAAGAAAAGTGGA
TTTGGATCAACCCCCATCTTTAATCGGAGTACCTACTCTTTTTGGAGGCACTGATGTCATAGCCAGAGATAAACAAACCA
AATTTATAAAAAAAATGATTGTTGTCCTTAGAGCAAATCTGGCGAAAGAGGAAGAAATCACAACCCCTGAACAATGGGAA
GCGAATTTAACTGCTTCCAGAGTCGTCATCGCAGCCTGTCTATATGTTCAATCGCAAATTTCATCTCCCAAAAACAACTC
CGCATTATATCGATTGATTAATAAGGATTTAGGCATTACTGATACCAATTATCTGGATGATGAAGACAAGGAAATCTGCT
TTTTAGCTGCCAATAGAGTAGTCAATTCCTCTTTATCCGCATTTAGCGATGCCAACGCAGCCTTGCGCAAAGTCAATATG
AAGCCATTTACCGAGCAGGAGTGGAGTGACTTTTCCAAGTTTGTCAGTAGTGTAAGTGTTAAAAAGGTATCTACCAATCC
GTACTCGAACTATCCCGTCACATCCATTACTCAACCGTTATTCGGAGCTGCTTTTTCTTATACAGGAGCAACGATTGGTT
ATCTTGGGGGGGATGTTATTAGCCAATCCTCCAAAACGATGTCGACCAAATTGCAAATTACTACCATGGTGGGAAGCAGC
CTGCTAATGCTTGGTACAACAGGACCTATGGGCGTGGCGTTGTTCTCTCAGGTTATAGCGAGTAAATTAGTCACGGCATT
TTTCAGTATTAGTTTGGCTCATGTTTTAGGAACAACCATGGGTATTCTCGGACAAGGCGTAGGAATAGGCATCGGGTTAC
CTTTGGATTATGCCTACAGATTAATATGGAAAGCCAGCGCCACTATTATGAATTACTACAGCAACTATCCTAATACCTCT
CAAATGACGGGTATTCGTATTGCGGATGGCAAATCCATCATGAATGGCATAGTGATTGAATACACTCCAAGCTCTGATTT
AAAAACTGAAGAAGAACAGCAAACAGTTGAAATTACTGAAGAAGGAAAACTTCTTATCAATGGAAAAGAAGTCACTATTC
CTGACGGCGGAGTTCAACTTCCACTAGAGTTAATTAATGAATTAAAAGCTCAATTGAAGCTACATGAAGAAAAAGTTAGC
GAAGAAGACTCTTCCTCTTCCACATTGCTAGCAACTGTTTGA

Upstream 100 bases:

>100_bases
CAACAATTTAGTAAAAATTAACCAAATCAGATTGCATTTAACCAGCTAATCGGTAAGATAAAAAACACACAAATAAATTT
TCAATGGATATGAGGTTATT

Downstream 100 bases:

>100_bases
TGTAGATGAGACAACTATCATTCTGCAATGCGAGTTGAGCCGTGCTATCTGCTCAACTCCACAGGTGCTATCATTAGCAG
TATTTCTAATAACGCATTAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MRYILPAGALTSLNFLRDDYQSERKVDLDQPPSLIGVPTLFGGTDVIARDKQTKFIKKMIVVLRANLAKEEEITTPEQWE
ANLTASRVVIAACLYVQSQISSPKNNSALYRLINKDLGITDTNYLDDEDKEICFLAANRVVNSSLSAFSDANAALRKVNM
KPFTEQEWSDFSKFVSSVSVKKVSTNPYSNYPVTSITQPLFGAAFSYTGATIGYLGGDVISQSSKTMSTKLQITTMVGSS
LLMLGTTGPMGVALFSQVIASKLVTAFFSISLAHVLGTTMGILGQGVGIGIGLPLDYAYRLIWKASATIMNYYSNYPNTS
QMTGIRIADGKSIMNGIVIEYTPSSDLKTEEEQQTVEITEEGKLLINGKEVTIPDGGVQLPLELINELKAQLKLHEEKVS
EEDSSSSTLLATV

Sequences:

>Translated_413_residues
MRYILPAGALTSLNFLRDDYQSERKVDLDQPPSLIGVPTLFGGTDVIARDKQTKFIKKMIVVLRANLAKEEEITTPEQWE
ANLTASRVVIAACLYVQSQISSPKNNSALYRLINKDLGITDTNYLDDEDKEICFLAANRVVNSSLSAFSDANAALRKVNM
KPFTEQEWSDFSKFVSSVSVKKVSTNPYSNYPVTSITQPLFGAAFSYTGATIGYLGGDVISQSSKTMSTKLQITTMVGSS
LLMLGTTGPMGVALFSQVIASKLVTAFFSISLAHVLGTTMGILGQGVGIGIGLPLDYAYRLIWKASATIMNYYSNYPNTS
QMTGIRIADGKSIMNGIVIEYTPSSDLKTEEEQQTVEITEEGKLLINGKEVTIPDGGVQLPLELINELKAQLKLHEEKVS
EEDSSSSTLLATV
>Mature_413_residues
MRYILPAGALTSLNFLRDDYQSERKVDLDQPPSLIGVPTLFGGTDVIARDKQTKFIKKMIVVLRANLAKEEEITTPEQWE
ANLTASRVVIAACLYVQSQISSPKNNSALYRLINKDLGITDTNYLDDEDKEICFLAANRVVNSSLSAFSDANAALRKVNM
KPFTEQEWSDFSKFVSSVSVKKVSTNPYSNYPVTSITQPLFGAAFSYTGATIGYLGGDVISQSSKTMSTKLQITTMVGSS
LLMLGTTGPMGVALFSQVIASKLVTAFFSISLAHVLGTTMGILGQGVGIGIGLPLDYAYRLIWKASATIMNYYSNYPNTS
QMTGIRIADGKSIMNGIVIEYTPSSDLKTEEEQQTVEITEEGKLLINGKEVTIPDGGVQLPLELINELKAQLKLHEEKVS
EEDSSSSTLLATV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44972; Mature: 44972

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYILPAGALTSLNFLRDDYQSERKVDLDQPPSLIGVPTLFGGTDVIARDKQTKFIKKMI
CCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCEECCHHHHHHHHHH
VVLRANLAKEEEITTPEQWEANLTASRVVIAACLYVQSQISSPKNNSALYRLINKDLGIT
HHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
DTNYLDDEDKEICFLAANRVVNSSLSAFSDANAALRKVNMKPFTEQEWSDFSKFVSSVSV
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCEE
KKVSTNPYSNYPVTSITQPLFGAAFSYTGATIGYLGGDVISQSSKTMSTKLQITTMVGSS
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCEEEEEEEEECCCC
LLMLGTTGPMGVALFSQVIASKLVTAFFSISLAHVLGTTMGILGQGVGIGIGLPLDYAYR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH
LIWKASATIMNYYSNYPNTSQMTGIRIADGKSIMNGIVIEYTPSSDLKTEEEQQTVEITE
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCCEEEEECCCCCCCCCCHHHHEEEEC
EGKLLINGKEVTIPDGGVQLPLELINELKAQLKLHEEKVSEEDSSSSTLLATV
CCEEEECCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
>Mature Secondary Structure
MRYILPAGALTSLNFLRDDYQSERKVDLDQPPSLIGVPTLFGGTDVIARDKQTKFIKKMI
CCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCEECCHHHHHHHHHH
VVLRANLAKEEEITTPEQWEANLTASRVVIAACLYVQSQISSPKNNSALYRLINKDLGIT
HHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
DTNYLDDEDKEICFLAANRVVNSSLSAFSDANAALRKVNMKPFTEQEWSDFSKFVSSVSV
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCEE
KKVSTNPYSNYPVTSITQPLFGAAFSYTGATIGYLGGDVISQSSKTMSTKLQITTMVGSS
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCEEEEEEEEECCCC
LLMLGTTGPMGVALFSQVIASKLVTAFFSISLAHVLGTTMGILGQGVGIGIGLPLDYAYR
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHH
LIWKASATIMNYYSNYPNTSQMTGIRIADGKSIMNGIVIEYTPSSDLKTEEEQQTVEITE
HHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHCCEEEEECCCCCCCCCCHHHHEEEEC
EGKLLINGKEVTIPDGGVQLPLELINELKAQLKLHEEKVSEEDSSSSTLLATV
CCEEEECCCEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA