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The map label for this gene is rpe [H]

Identifier: 54293648

GI number: 54293648

Start: 788768

End: 789421

Strand: Reverse

Name: rpe [H]

Synonym: lpl0701

Alternate gene names: 54293648

Gene position: 789421-788768 (Counterclockwise)

Preceding gene: 54293649

Following gene: 54293647

Centisome position: 23.6

GC content: 41.44

Gene sequence:

>654_bases
ATGACATTCCAAATTTTACCCTCGTTACTGTCAGCGGACATGACCCGTTTAGGAGAGGAAGTAGATGCCGTTATGAAAGC
CGGCTCTGATTTTATTCATTTTGATGTCATGGATAACCATTATGTACCCAACCTGACTTTTGGCCCCGCTTTCTGTGACG
CTTTAATCAAAAAATTTCCAAATTTGCCGATTGATGTCCATTTGATGACCACCCCGGTTGATACTCTAATCGAAGCATTT
GCCAAAGCAGGTGCGAAACGTATCAGTATTCATCCAGATGCTACTATTCATTTAGACAGGAGTTTGCAGTTAATCAATAA
CCTTGGATGTGAAGCGGGTTTAGTGCTCAACCCAGCTACATCAATCGACACATTAACCTGGTGCGCCCATAATCTAAAAT
TTGTTTTGGTCATGACAGTTAACCCGGGATTTGGCGGTCAAAAACTTATCCCGGAGGTTATACCCAAGCTCTCTAAAATT
CGGCAACAGCACCCAAATCTCGATCTTTGTGTTGATGGTGGAGTCACACCCCAGAATATTGCTTCATTAGCACATGCAGG
AGCTAACCAATTTGTTGCAGGTTCTGCTATATTCAATAGCAGTAATTATAGTGAAACCATTAAACATATGCGTGAACAAT
TAGCAAGCATTTAA

Upstream 100 bases:

>100_bases
TTAAATCAATAAAACTCGATATGAATCCAAATCGTAATGCTGGAATGTTTACCAAAGTCAGCTTATTATATGTAAAAGCA
AACCGTTGAATTACTAAATC

Downstream 100 bases:

>100_bases
AAGTGCCAAATAATTGCCCTCAAGCCTTATTAAGAGGAATTATGAAAAAATTATTAATTTTTTTATGTGGGCTTCTCTGT
TCTTTCAACTTGTTTGCTTT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTFQILPSLLSADMTRLGEEVDAVMKAGSDFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAF
AKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKI
RQQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI

Sequences:

>Translated_217_residues
MTFQILPSLLSADMTRLGEEVDAVMKAGSDFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAF
AKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKI
RQQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI
>Mature_216_residues
TFQILPSLLSADMTRLGEEVDAVMKAGSDFIHFDVMDNHYVPNLTFGPAFCDALIKKFPNLPIDVHLMTTPVDTLIEAFA
KAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPATSIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIR
QQHPNLDLCVDGGVTPQNIASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=209, Percent_Identity=39.2344497607655, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI219879828, Length=209, Percent_Identity=36.8421052631579, Blast_Score=148, Evalue=5e-36,
Organism=Homo sapiens, GI24307923, Length=164, Percent_Identity=34.1463414634146, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=50.2283105022831, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1790523, Length=220, Percent_Identity=34.5454545454545, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1790754, Length=201, Percent_Identity=34.3283582089552, Blast_Score=112, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17552948, Length=211, Percent_Identity=39.8104265402844, Blast_Score=163, Evalue=6e-41,
Organism=Saccharomyces cerevisiae, GI6322341, Length=224, Percent_Identity=36.6071428571429, Blast_Score=157, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24586301, Length=213, Percent_Identity=37.0892018779343, Blast_Score=156, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23586; Mature: 23454

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFQILPSLLSADMTRLGEEVDAVMKAGSDFIHFDVMDNHYVPNLTFGPAFCDALIKKFP
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
NLPIDVHLMTTPVDTLIEAFAKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPAT
CCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCEEECCCC
SIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIRQQHPNLDLCVDGGVTPQNI
CHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
ASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI
HHHHHCCCCCEEECHHEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TFQILPSLLSADMTRLGEEVDAVMKAGSDFIHFDVMDNHYVPNLTFGPAFCDALIKKFP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCC
NLPIDVHLMTTPVDTLIEAFAKAGAKRISIHPDATIHLDRSLQLINNLGCEAGLVLNPAT
CCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCEEEECHHHHHHHHCCCCCCEEECCCC
SIDTLTWCAHNLKFVLVMTVNPGFGGQKLIPEVIPKLSKIRQQHPNLDLCVDGGVTPQNI
CHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
ASLAHAGANQFVAGSAIFNSSNYSETIKHMREQLASI
HHHHHCCCCCEEECHHEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]