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The map label for this gene is yiaD [H]

Identifier: 54293640

GI number: 54293640

Start: 773793

End: 774485

Strand: Reverse

Name: yiaD [H]

Synonym: lpl0693

Alternate gene names: 54293640

Gene position: 774485-773793 (Counterclockwise)

Preceding gene: 54293647

Following gene: 54293639

Centisome position: 23.15

GC content: 41.99

Gene sequence:

>693_bases
ATGTCACGCAAATTAGCCAAAACACGAATCCTTGGTTATGGATTAATGATTTGCTTTCTTGCGGGCTGCTTTCATCCCCC
TTATAACAACTTTCAACCCGATAGACGAGCTGTTAAGAGAGTAGGAGTAGATACAGGGATTGGTGCTGTAGCTGGGGTAA
TAGCCAGTGGTACTGCTTCAGGAACTCTTATTGGGGCAGCGGCTGGTGGTACCGTAGGTCTGGTTGCGAGTATCTACCGT
GACAGCAAACGCAAAATCATCAGAGATCTGCAAAAGCAGGATATTCAGTATGTTGAATATGGAGATACCCGAACATTAAT
TATTCCTACAGACAAATATTTCATGTTTAGCAGCCCTCGCCTTAATGAAATATGCTATCCTGGCCTAAACAATGTCATTA
GACTGTTAAATTTTTATCCTCAAAGTACGATTTATGTTGCCGGATTTACTGATAATGTCGGATCACGCAGCCATAAGAGA
AAACTTTCTCAAGCGCAAGCTGAAACAATGATGACTTTTCTCTGGGCTAATGGTATTGCAGCCAAAAGACTAAAAGCAGA
AGGCTATGGAGATAAGAATGCGATTTCTGACAATGCTATTATTCATGGAAGCGCTCAGAACAGAAGAATCGAGATCCAGT
GGTTTACAAGCCCTGCTCAACCCCCACAACCACAAATGGCTTATGTAAAATAA

Upstream 100 bases:

>100_bases
AAATTATTTTTTTATACGTCCTGTAAAAATATAAAGTGTTAGATTGCGAAATTTAATGAGATGCTTAATAATGATTAAAT
CATTGATTAAAGGAGTGGAT

Downstream 100 bases:

>100_bases
AGGTTTATTAATGCGTTCAAGATTTATAGGCGGCATCTTATTGATAGTTGGTACCTCCATTGGTGGAGGGATGTTGGCTC
TACCAGTAGCTAATGCAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTASGTLIGAAAGGTVGLVASIYR
DSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKR
KLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK

Sequences:

>Translated_230_residues
MSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTASGTLIGAAAGGTVGLVASIYR
DSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKR
KLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK
>Mature_229_residues
SRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTASGTLIGAAAGGTVGLVASIYRD
SKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRK
LSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=135, Percent_Identity=31.8518518518519, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25358; Mature: 25226

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTAS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCC
GTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPR
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEECCCC
LNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIA
CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
AKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK
HHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SRKLAKTRILGYGLMICFLAGCFHPPYNNFQPDRRAVKRVGVDTGIGAVAGVIASGTAS
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCC
GTLIGAAAGGTVGLVASIYRDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFMFSSPR
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEECCCC
LNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIA
CCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
AKRLKAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSPAQPPQPQMAYVK
HHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]