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The map label for this gene is yciR [C]

Identifier: 54293038

GI number: 54293038

Start: 87091

End: 88704

Strand: Direct

Name: yciR [C]

Synonym: lpl0075

Alternate gene names: 54293038

Gene position: 87091-88704 (Clockwise)

Preceding gene: 54293037

Following gene: 54293041

Centisome position: 2.6

GC content: 36.37

Gene sequence:

>1614_bases
ATGAATATTAAATCTAATTTGGCACATAGCTCTGTTATCCTGAAAGGTCATGTTAATCGATATGCTTTTTTAGGATTGCT
GATTTCTGTTGGCAGTATCTTGATCGCAAGTTGTATCGTTTCCTATCAATTGACTGGATCTGTGAATTTAGCCGGGTTTA
TTCAGGCTCAAAGATCTAACCCGGCAATTTGGATCCTGGATTTAACACCTTTTATGTTTGTGTATTGGGGACAAGCGTTT
TGTTATGGATTGGTTAACAAAGCGGAGAGTTTACTGGTTGATAAAACCAAAGAGCTTTTAAATATCAGTGGAAATCTGGA
ATTAAAGCTCAAATATGAAAGTAATCACGATAGCTTGACCAATTTGCCTAATAATCGCTTGTTAAATGAAAAAATACGTC
TTGCCATCGAACAATTGGGCTCACAGGGTAAATTAGCTGTTATTGTGATAAAAATTAATGATCTTAATTATAATTTCAGC
TCATTTAATGCCAATAATATCGTAAAGCAATTTGCTGAAAAATTAAAATCGATTTTGATTGATCCTTACATGCTAAAAGC
TTCTCTTGGAATTAATATGGTTGCAAGATTGCAAAGTGATGAATTTGCCATATTGATGCCGAGACTTAAAAAAGATTTGG
ATATTAATGAGCTATTAATCCATCTTCTTACCTTGCTGAATAATAACCTGATGGTGGATGGAATTAGTATCAATGTGACA
TCTACTGTTGGTGCCGCTATCTATCCTGTCCATGGAGAGGAAGACGATGTTTTAGTTAATCATGCCATTATCGCAGTTTA
CCAGGCACGAAAGGGAAACAAATCCTATGCAATATACAGCCCTGAAATGGAAGAGGACCTTATACAGAATCAGATGGTGA
TGAATGAGCTGCAACGCTCCATTGAAAACAAAGATTTGAAAATTTATTACCAGCCGATAGTTGAGCTGGCTAATGGCCAA
ATTGTAGGTGCCGAGTCATCAGCTCGTTTTGAACATCCTGAATTGGGTTTATTAAGTGCAGAAAAATTCATGCCTTTAAT
CGAGGGAACCAATTTAATTCATAATTTGACAACTCTTATGCTTAAGCAAGTCATAAAGCAATTAGCCGCCTGGCATGATG
CTGGGCATAAAATTTTTGTTTCTGTAAATCTGTCAGTGCACCATGAGTTGCCTGAATTAATAGAGAAATTATTAAATGAT
TATGAGATTGCCCCGCAATTCTTGAAACTTGAATTTACCGAAAGGGCTTGTTTAACTGAACAGATGGTTACCAAAGAAGT
GTTTGACCGATTATCAGCCATGGGCATCAAATTATGGATTGATGATTTTTGCAGTGAGAACTCTTCCTTCATTCAGTTGA
CTAATTTCCCTATCGAAAACATTAAAATTGAGAAATCATTCGTACTGAAAATTGCAAAAGATGCAAAGAAAGCCAAAATT
GTAGAGGCTATAGTAAAACTGGCCCAAACATTAGGGTGGGAGCCCCTGGCAGATGGCATCGCTGATCAAAATGCATTGGA
AAAATTAAGAGACTTAGGTTGCTTGTATGGTCAGGGATTATATTTTTCTCGAGCGGTCAATGTGGCTGAATTTACATCAT
TGCTAAAGAAATGA

Upstream 100 bases:

>100_bases
TCTATTTATTCAGTTTTTTGTAGAGCATTGAAGTCGCTGTAGAAGGGATAAGGAATTAAAAATTAGCCTGTGACAGGCAT
AAGGGAATTACTGTTAATCC

Downstream 100 bases:

>100_bases
ATCTGGCTTTAAATCACTTACCATTCGTTTTCCCGCTTTGATTCACATGGAATACGAATCACAACGCTGACACGCTATGG
CCACACTGATATTAAAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MNIKSNLAHSSVILKGHVNRYAFLGLLISVGSILIASCIVSYQLTGSVNLAGFIQAQRSNPAIWILDLTPFMFVYWGQAF
CYGLVNKAESLLVDKTKELLNISGNLELKLKYESNHDSLTNLPNNRLLNEKIRLAIEQLGSQGKLAVIVIKINDLNYNFS
SFNANNIVKQFAEKLKSILIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELLIHLLTLLNNNLMVDGISINVT
STVGAAIYPVHGEEDDVLVNHAIIAVYQARKGNKSYAIYSPEMEEDLIQNQMVMNELQRSIENKDLKIYYQPIVELANGQ
IVGAESSARFEHPELGLLSAEKFMPLIEGTNLIHNLTTLMLKQVIKQLAAWHDAGHKIFVSVNLSVHHELPELIEKLLND
YEIAPQFLKLEFTERACLTEQMVTKEVFDRLSAMGIKLWIDDFCSENSSFIQLTNFPIENIKIEKSFVLKIAKDAKKAKI
VEAIVKLAQTLGWEPLADGIADQNALEKLRDLGCLYGQGLYFSRAVNVAEFTSLLKK

Sequences:

>Translated_537_residues
MNIKSNLAHSSVILKGHVNRYAFLGLLISVGSILIASCIVSYQLTGSVNLAGFIQAQRSNPAIWILDLTPFMFVYWGQAF
CYGLVNKAESLLVDKTKELLNISGNLELKLKYESNHDSLTNLPNNRLLNEKIRLAIEQLGSQGKLAVIVIKINDLNYNFS
SFNANNIVKQFAEKLKSILIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELLIHLLTLLNNNLMVDGISINVT
STVGAAIYPVHGEEDDVLVNHAIIAVYQARKGNKSYAIYSPEMEEDLIQNQMVMNELQRSIENKDLKIYYQPIVELANGQ
IVGAESSARFEHPELGLLSAEKFMPLIEGTNLIHNLTTLMLKQVIKQLAAWHDAGHKIFVSVNLSVHHELPELIEKLLND
YEIAPQFLKLEFTERACLTEQMVTKEVFDRLSAMGIKLWIDDFCSENSSFIQLTNFPIENIKIEKSFVLKIAKDAKKAKI
VEAIVKLAQTLGWEPLADGIADQNALEKLRDLGCLYGQGLYFSRAVNVAEFTSLLKK
>Mature_537_residues
MNIKSNLAHSSVILKGHVNRYAFLGLLISVGSILIASCIVSYQLTGSVNLAGFIQAQRSNPAIWILDLTPFMFVYWGQAF
CYGLVNKAESLLVDKTKELLNISGNLELKLKYESNHDSLTNLPNNRLLNEKIRLAIEQLGSQGKLAVIVIKINDLNYNFS
SFNANNIVKQFAEKLKSILIDPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELLIHLLTLLNNNLMVDGISINVT
STVGAAIYPVHGEEDDVLVNHAIIAVYQARKGNKSYAIYSPEMEEDLIQNQMVMNELQRSIENKDLKIYYQPIVELANGQ
IVGAESSARFEHPELGLLSAEKFMPLIEGTNLIHNLTTLMLKQVIKQLAAWHDAGHKIFVSVNLSVHHELPELIEKLLND
YEIAPQFLKLEFTERACLTEQMVTKEVFDRLSAMGIKLWIDDFCSENSSFIQLTNFPIENIKIEKSFVLKIAKDAKKAKI
VEAIVKLAQTLGWEPLADGIADQNALEKLRDLGCLYGQGLYFSRAVNVAEFTSLLKK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=445, Percent_Identity=26.2921348314607, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=27.6497695852535, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=33.739837398374, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI226510982, Length=438, Percent_Identity=24.4292237442922, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=28.7449392712551, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=30.3643724696356, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=28.6885245901639, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=28.6885245901639, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=26.8, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082096, Length=275, Percent_Identity=26.1818181818182, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787055, Length=289, Percent_Identity=21.4532871972318, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788849, Length=241, Percent_Identity=24.0663900414938, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 60279; Mature: 60279

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSNLAHSSVILKGHVNRYAFLGLLISVGSILIASCIVSYQLTGSVNLAGFIQAQRSN
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEECCC
PAIWILDLTPFMFVYWGQAFCYGLVNKAESLLVDKTKELLNISGNLELKLKYESNHDSLT
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHH
NLPNNRLLNEKIRLAIEQLGSQGKLAVIVIKINDLNYNFSSFNANNIVKQFAEKLKSILI
CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
DPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELLIHLLTLLNNNLMVDGISINVT
CCHHHHHHCCCCEEEEECCCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEEEEE
STVGAAIYPVHGEEDDVLVNHAIIAVYQARKGNKSYAIYSPEMEEDLIQNQMVMNELQRS
CCCCEEEEECCCCCCCEEEHHEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
IENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLLSAEKFMPLIEGTNLIHNLTTLM
HCCCCEEEEEEHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
LKQVIKQLAAWHDAGHKIFVSVNLSVHHELPELIEKLLNDYEIAPQFLKLEFTERACLTE
HHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCHHEEEEHHHHHHHHH
QMVTKEVFDRLSAMGIKLWIDDFCSENSSFIQLTNFPIENIKIEKSFVLKIAKDAKKAKI
HHHHHHHHHHHHHCCHHEEEHHHCCCCCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHH
VEAIVKLAQTLGWEPLADGIADQNALEKLRDLGCLYGQGLYFSRAVNVAEFTSLLKK
HHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MNIKSNLAHSSVILKGHVNRYAFLGLLISVGSILIASCIVSYQLTGSVNLAGFIQAQRSN
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEECCC
PAIWILDLTPFMFVYWGQAFCYGLVNKAESLLVDKTKELLNISGNLELKLKYESNHDSLT
CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHH
NLPNNRLLNEKIRLAIEQLGSQGKLAVIVIKINDLNYNFSSFNANNIVKQFAEKLKSILI
CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
DPYMLKASLGINMVARLQSDEFAILMPRLKKDLDINELLIHLLTLLNNNLMVDGISINVT
CCHHHHHHCCCCEEEEECCCCEEEEEHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEEEEE
STVGAAIYPVHGEEDDVLVNHAIIAVYQARKGNKSYAIYSPEMEEDLIQNQMVMNELQRS
CCCCEEEEECCCCCCCEEEHHEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
IENKDLKIYYQPIVELANGQIVGAESSARFEHPELGLLSAEKFMPLIEGTNLIHNLTTLM
HCCCCEEEEEEHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
LKQVIKQLAAWHDAGHKIFVSVNLSVHHELPELIEKLLNDYEIAPQFLKLEFTERACLTE
HHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCHHEEEEHHHHHHHHH
QMVTKEVFDRLSAMGIKLWIDDFCSENSSFIQLTNFPIENIKIEKSFVLKIAKDAKKAKI
HHHHHHHHHHHHHCCHHEEEHHHCCCCCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHH
VEAIVKLAQTLGWEPLADGIADQNALEKLRDLGCLYGQGLYFSRAVNVAEFTSLLKK
HHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]