Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 54297159

GI number: 54297159

Start: 1342784

End: 1344316

Strand: Direct

Name: cydA [H]

Synonym: lpp1204

Alternate gene names: 54297159

Gene position: 1342784-1344316 (Clockwise)

Preceding gene: 54297149

Following gene: 54297160

Centisome position: 38.33

GC content: 39.86

Gene sequence:

>1533_bases
ATGATTCCAGCTGCTGAAGTTGTTGATTTATCAAGATTACAATTTGCATTAACTGCACTATATCATTTTCTATTTGTGCC
CCTTACGTTGGGGTTATCGGTTATGTTAGCGATCATGGAGACAGTTTATGTAATGACTGGCCGGGAACTCTGGAAGCAAA
TGGTCAAATACTGGGGTATTTTGTTTGGGATTAATTTTGTTTTGGGAGTTGCAACCGGTCTGACTATGGAATTCCAGTTT
GGTACTAACTGGGCTTACTATTCACATTATGTTGGAGATGTATTTGGTGCTCCATTAGCAATTGAAGGACTAATGGCCTT
TTTTCTGGAAGCTACTTTTGTGGGGTTATTTTTCTTTGGCTGGAACAGATTGTCAAAATTGCAGCATCTGACCTCTACAT
GGCTATTGGCTTTAGGTACTAATCTTTCAGCATTATGGATTTTAATCGCTAATGGTTGGATGCAACATCCTGTAGGTGCC
TATTTTGATTACCAAACGATGAGAATGGAAGTCAGCAGTTTTTACGAAATGATGTTTAACCCTGTCGCTCAGGCTAAGTT
TGTGCATACTATCAGTGCGGGATATGTGACAGGAGCCATGTTTGTCTTGTCCATAAGCGCCTATTTTCTTTTGCGGGGAC
GAAATAAAGCGTTTGCCAAACGCTCAATGACAGTCGCAGTTTCTTTTGGTTTGGCATCAGCATTGTCTGTTGTGGTATTG
GGAGATGAGAGCGGTTACGTTGCCAATGAAAACCAAAAAATGAAATTGGCTGCGATGGAAGCGATGTGGCATACCGAAAA
AGCTCCCGCCAATTTGACTATTTTCGGGATACCAGATGAGAAAAGTTTCACGACAAAATATGCGATAGATATTCCTTATG
CTCTTGGTATTATTGCTACTCGTTCGTTCAATACTCCTTTACAGGGCATTATTGAATTAATTGAGGAAGGAAAATTAAAA
ATCAAAGATGGGATGATCGCATACGATGCATTGAAAGTTCTTCAGAAAGATCCAAAGAACGAACAAGCCAAGGCTGTCTT
TACAAAGCACAGTGAAAATCTGGGTTATGCTTTGTTGCTCAAGAAGTATACTGAAAATGTAACGGATGCCACTGAAGAGC
AAATAAATCAAGCAGCGCACGATCTCAAACCTAAAGTACTGCCAATGTTCTTCTCATTTAGAATTATGGTTGCTTGCGGG
ATATATTTTATACTTCTTTTCGCAACCGGTTTTTATTTGTCTGTAAGACATCGGTTGGAAAAAACATCTTGGTACCACAG
GGTTGCATTTTACTCTTTGCCTTTACCTTGGATAGCGGCTGAATTAGGGTGGATAGTAGCAGAATATGGTCGCCAACCCT
GGGTTGTTGAAGGTATTCTGCCTACTTTTATGGGAGCCTCCTCTTTAACATCAGGGCAAGTAATGACATCAATTGCAGGC
TTTGTATTGTTTTATACTGTTCTTGCAATTGTTGAGATTTATTTAATGGTCAAATACATACGTCTTGGCCCAGATGGGAT
AAATCATCATTGA

Upstream 100 bases:

>100_bases
TGTGTCAGAGGAATGCATCCTGATCTGTCTAGTAATAAAGAATGGTTGTTAGGAAAAGAAGAACAAACAGTACTTACCCC
AAATAACAAGAGGTAGTTTT

Downstream 100 bases:

>100_bases
TGAAAGGAGAATCAAATGCCTTTGGATTATGAAACACTCAGAATAATTTGGTGGTTATTAATAGGTATTTTGCTTATTGG
TTTTGCCATTATGGATGGAT

Product: cytochrome d ubiquinol oxidase subunit I

Products: Ubiquinone-8; H2O. [C]

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRELWKQMVKYWGILFGINFVLGVATGLTMEFQF
GTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFGWNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGA
YFDYQTMRMEVSSFYEMMFNPVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
GDESGYVANENQKMKLAAMEAMWHTEKAPANLTIFGIPDEKSFTTKYAIDIPYALGIIATRSFNTPLQGIIELIEEGKLK
IKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLLKKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACG
IYFILLFATGFYLSVRHRLEKTSWYHRVAFYSLPLPWIAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
FVLFYTVLAIVEIYLMVKYIRLGPDGINHH

Sequences:

>Translated_510_residues
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRELWKQMVKYWGILFGINFVLGVATGLTMEFQF
GTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFGWNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGA
YFDYQTMRMEVSSFYEMMFNPVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
GDESGYVANENQKMKLAAMEAMWHTEKAPANLTIFGIPDEKSFTTKYAIDIPYALGIIATRSFNTPLQGIIELIEEGKLK
IKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLLKKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACG
IYFILLFATGFYLSVRHRLEKTSWYHRVAFYSLPLPWIAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
FVLFYTVLAIVEIYLMVKYIRLGPDGINHH
>Mature_510_residues
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRELWKQMVKYWGILFGINFVLGVATGLTMEFQF
GTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFGWNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGA
YFDYQTMRMEVSSFYEMMFNPVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
GDESGYVANENQKMKLAAMEAMWHTEKAPANLTIFGIPDEKSFTTKYAIDIPYALGIIATRSFNTPLQGIIELIEEGKLK
IKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLLKKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACG
IYFILLFATGFYLSVRHRLEKTSWYHRVAFYSLPLPWIAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
FVLFYTVLAIVEIYLMVKYIRLGPDGINHH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=503, Percent_Identity=59.8409542743539, Blast_Score=654, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=503, Percent_Identity=51.6898608349901, Blast_Score=543, Evalue=1e-155,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.- [C]

Molecular weight: Translated: 57310; Mature: 57310

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRELWKQMVKYWGI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGINFVLGVATGLTMEFQFGTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFG
HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGAYFDYQTMRMEVSSFYEMMFN
HHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
PVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHCEEEEEEHHHHHHEEEEEE
GDESGYVANENQKMKLAAMEAMWHTEKAPANLTIFGIPDEKSFTTKYAIDIPYALGIIAT
ECCCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHEE
RSFNTPLQGIIELIEEGKLKIKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLL
CCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHH
KKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACGIYFILLFATGFYLSVRHRLE
HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTSWYHRVAFYSLPLPWIAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
HHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHH
FVLFYTVLAIVEIYLMVKYIRLGPDGINHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIPAAEVVDLSRLQFALTALYHFLFVPLTLGLSVMLAIMETVYVMTGRELWKQMVKYWGI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGINFVLGVATGLTMEFQFGTNWAYYSHYVGDVFGAPLAIEGLMAFFLEATFVGLFFFG
HHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WNRLSKLQHLTSTWLLALGTNLSALWILIANGWMQHPVGAYFDYQTMRMEVSSFYEMMFN
HHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
PVAQAKFVHTISAGYVTGAMFVLSISAYFLLRGRNKAFAKRSMTVAVSFGLASALSVVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHCEEEEEEHHHHHHEEEEEE
GDESGYVANENQKMKLAAMEAMWHTEKAPANLTIFGIPDEKSFTTKYAIDIPYALGIIAT
ECCCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHEE
RSFNTPLQGIIELIEEGKLKIKDGMIAYDALKVLQKDPKNEQAKAVFTKHSENLGYALLL
CCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHH
KKYTENVTDATEEQINQAAHDLKPKVLPMFFSFRIMVACGIYFILLFATGFYLSVRHRLE
HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTSWYHRVAFYSLPLPWIAAELGWIVAEYGRQPWVVEGILPTFMGASSLTSGQVMTSIAG
HHHHHHHHHHEECCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCHHHHHHHH
FVLFYTVLAIVEIYLMVKYIRLGPDGINHH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O. [C]

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]