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The map label for this gene is cydB [H]

Identifier: 54297160

GI number: 54297160

Start: 1344332

End: 1345468

Strand: Direct

Name: cydB [H]

Synonym: lpp1205

Alternate gene names: 54297160

Gene position: 1344332-1345468 (Clockwise)

Preceding gene: 54297159

Following gene: 54297162

Centisome position: 38.37

GC content: 38.96

Gene sequence:

>1137_bases
ATGCCTTTGGATTATGAAACACTCAGAATAATTTGGTGGTTATTAATAGGTATTTTGCTTATTGGTTTTGCCATTATGGA
TGGATTTGACCTCGGTGTGGCAATGTGGCTTCCCTGGTTAGGTAGAACAGATATTGAGAGACGGATATTAATTAACAGCA
TTGGCCCAACATGGGAGGGTAACCAGGTTTGGTTTATACTGGGCGGAGGCGCTATTTTTGCGGCTTGGCCTACTCTCTAT
GCCTTATCTTTCTCAGGTTTTTACTTGGCTATGCTGGTTGTTCTTTTGGCGTTGATTTTAAGACCCGTTGGCTTTAAATA
CAGATCAAAGCTGGATAACCCCATATGGAGAGCATTTTGGGATTGGGCTTTATTCATCGGTGGATTTGTTCCGGCTTTAA
TCTTTGGGGTAGCGGTTGGAAATGTCATACAAGGTGTTCCATTTTATTTTGATGAGAGTTTAAGAGTATTCTATACGGGA
AGTTTTTTTGAATTACTCAATCCGTTTGCTTTAGGGTGTGGATTATTATCTGTGCTTATGCTTGCTATGCATGGTGCTTT
TTTTATTCAAGTAAAAACTGTAGGGACTTTGCAAAATAAAGCAAAAGACAGGGCTCGCTGGAGTGCTCTTTTGGTTATTC
TTTTATTTATTGGATTAGGGGCTTGGGTTTATTATGGTATTGATGGTTATGTTTTAAAAGGAACGGTTCCCCATGATGGG
CCATCAAATCCTTCTTACAAGGACGTCATTATTCAAGCCGGAGCATGGTTTAATAATTATAAAGAGTATCCAGTATCACT
TTTAGTGCCTGTTTTATGCGTAATATCCGCTTTTTTAGCGATTATTTTTGCGAATAAAAGTGTGTTGGCTTTTGTGCTGA
GCGGATTGAGTGTTGGTACTTTGATTGCAACGGTAGGGGTTAGTATGTTTCCTTTCATATTACCCTCTTCTTCAAATCCT
AAATACAGTTTGATCGTTTGGGATAGCTCTTCCAGCCAGGTTACTTTGTTTATTATGTTAGTGGCAACGGTATTATTATT
GCCTATTGTGCTTGCATACACTGCTTGGGTTTATCGAGTGTTACGAGGTAAGGTAACTGAAAGTTCTATTAAAGCAGAGC
AAGATTCTGCATATTAG

Upstream 100 bases:

>100_bases
GTTTTATACTGTTCTTGCAATTGTTGAGATTTATTTAATGGTCAAATACATACGTCTTGGCCCAGATGGGATAAATCATC
ATTGATGAAAGGAGAATCAA

Downstream 100 bases:

>100_bases
GAGGTTTTTCTATGTGGTATTTCTCCTGGATTTTGGGCACAGGACTAGCTTGTGTGTTCGCGGTGCTTAACGCAGTATGG
TTGGAACTTAGAGAAGAAGA

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MPLDYETLRIIWWLLIGILLIGFAIMDGFDLGVAMWLPWLGRTDIERRILINSIGPTWEGNQVWFILGGGAIFAAWPTLY
ALSFSGFYLAMLVVLLALILRPVGFKYRSKLDNPIWRAFWDWALFIGGFVPALIFGVAVGNVIQGVPFYFDESLRVFYTG
SFFELLNPFALGCGLLSVLMLAMHGAFFIQVKTVGTLQNKAKDRARWSALLVILLFIGLGAWVYYGIDGYVLKGTVPHDG
PSNPSYKDVIIQAGAWFNNYKEYPVSLLVPVLCVISAFLAIIFANKSVLAFVLSGLSVGTLIATVGVSMFPFILPSSSNP
KYSLIVWDSSSSQVTLFIMLVATVLLLPIVLAYTAWVYRVLRGKVTESSIKAEQDSAY

Sequences:

>Translated_378_residues
MPLDYETLRIIWWLLIGILLIGFAIMDGFDLGVAMWLPWLGRTDIERRILINSIGPTWEGNQVWFILGGGAIFAAWPTLY
ALSFSGFYLAMLVVLLALILRPVGFKYRSKLDNPIWRAFWDWALFIGGFVPALIFGVAVGNVIQGVPFYFDESLRVFYTG
SFFELLNPFALGCGLLSVLMLAMHGAFFIQVKTVGTLQNKAKDRARWSALLVILLFIGLGAWVYYGIDGYVLKGTVPHDG
PSNPSYKDVIIQAGAWFNNYKEYPVSLLVPVLCVISAFLAIIFANKSVLAFVLSGLSVGTLIATVGVSMFPFILPSSSNP
KYSLIVWDSSSSQVTLFIMLVATVLLLPIVLAYTAWVYRVLRGKVTESSIKAEQDSAY
>Mature_377_residues
PLDYETLRIIWWLLIGILLIGFAIMDGFDLGVAMWLPWLGRTDIERRILINSIGPTWEGNQVWFILGGGAIFAAWPTLYA
LSFSGFYLAMLVVLLALILRPVGFKYRSKLDNPIWRAFWDWALFIGGFVPALIFGVAVGNVIQGVPFYFDESLRVFYTGS
FFELLNPFALGCGLLSVLMLAMHGAFFIQVKTVGTLQNKAKDRARWSALLVILLFIGLGAWVYYGIDGYVLKGTVPHDGP
SNPSYKDVIIQAGAWFNNYKEYPVSLLVPVLCVISAFLAIIFANKSVLAFVLSGLSVGTLIATVGVSMFPFILPSSSNPK
YSLIVWDSSSSQVTLFIMLVATVLLLPIVLAYTAWVYRVLRGKVTESSIKAEQDSAY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=51.8518518518518, Blast_Score=405, Evalue=1e-114,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=48.2758620689655, Blast_Score=356, Evalue=2e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41921; Mature: 41790

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLDYETLRIIWWLLIGILLIGFAIMDGFDLGVAMWLPWLGRTDIERRILINSIGPTWEG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCC
NQVWFILGGGAIFAAWPTLYALSFSGFYLAMLVVLLALILRPVGFKYRSKLDNPIWRAFW
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHH
DWALFIGGFVPALIFGVAVGNVIQGVPFYFDESLRVFYTGSFFELLNPFALGCGLLSVLM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHH
LAMHGAFFIQVKTVGTLQNKAKDRARWSALLVILLFIGLGAWVYYGIDGYVLKGTVPHDG
HHHCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
PSNPSYKDVIIQAGAWFNNYKEYPVSLLVPVLCVISAFLAIIFANKSVLAFVLSGLSVGT
CCCCCHHHHEEECCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
LIATVGVSMFPFILPSSSNPKYSLIVWDSSSSQVTLFIMLVATVLLLPIVLAYTAWVYRV
HHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGKVTESSIKAEQDSAY
HHCCCCHHHHCCCCCCCC
>Mature Secondary Structure 
PLDYETLRIIWWLLIGILLIGFAIMDGFDLGVAMWLPWLGRTDIERRILINSIGPTWEG
CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCC
NQVWFILGGGAIFAAWPTLYALSFSGFYLAMLVVLLALILRPVGFKYRSKLDNPIWRAFW
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHH
DWALFIGGFVPALIFGVAVGNVIQGVPFYFDESLRVFYTGSFFELLNPFALGCGLLSVLM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHH
LAMHGAFFIQVKTVGTLQNKAKDRARWSALLVILLFIGLGAWVYYGIDGYVLKGTVPHDG
HHHCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
PSNPSYKDVIIQAGAWFNNYKEYPVSLLVPVLCVISAFLAIIFANKSVLAFVLSGLSVGT
CCCCCHHHHEEECCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH
LIATVGVSMFPFILPSSSNPKYSLIVWDSSSSQVTLFIMLVATVLLLPIVLAYTAWVYRV
HHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRGKVTESSIKAEQDSAY
HHCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]