Click here to switch to the map view.

The map label for this gene is 54296930

Identifier: 54296930

GI number: 54296930

Start: 1076166

End: 1076573

Strand: Direct

Name: 54296930

Synonym: lpp0971

Alternate gene names: NA

Gene position: 1076166-1076573 (Clockwise)

Preceding gene: 54296926

Following gene: 54296931

Centisome position: 30.72

GC content: 37.5

Gene sequence:

>408_bases
ATGAGACCTTGTTATTTTGTTTGTATATTGGCTTTATTTATGTTTGCGATGCCAGGGTACTCTGAGAATCATCATCCTCA
AGAGTTTCTAAAGTCAATTGCTGGCACAAAAGATGAAGGGGAAAAAATTTTTAATCATTTTTGTGTTAATTGCCATGGAA
CGAAACCAATGATTTCTTTAGGAGCCCCTGAAATTGGAAATGAAAGAGCATGGGGAGAACGATTGAAACAAGGAATGGAA
GTGCTTTTTAAACACACCGATGAAGGGTTTAATGCCATGCCTCCCAGAGGAGGATGCTTTGAATGCACTGATAAACAGCT
GATTCTAGCTATCATTGCGATGGTTCCCAAACAGGCTCAAAAAGGACTATTAAACAATCTTTTAGGTCATAAAGAATACA
AACAGTAA

Upstream 100 bases:

>100_bases
ATGCACTTTTTCACGACATAAACTCCCTTAGTCTATTGATTTTTTATATTGAAACGCATTGTGTCCCAAGCAAGTATTGC
GCCAATTTTAGGAGTATATC

Downstream 100 bases:

>100_bases
AAAATTTTTATAAAAAAGCCTAAACTTATTCAAACTGCTCCCGATATAGTTAAAAAGAGAAAGAGGGAGATAGAAAGTGA
AAAAACAAATACTGTTAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Cytochrome C-Type Protein; Cb-Type Cytochrome Oxidase Subunit III; Cytochrome C Family Protein; Cytochrome C

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MRPCYFVCILALFMFAMPGYSENHHPQEFLKSIAGTKDEGEKIFNHFCVNCHGTKPMISLGAPEIGNERAWGERLKQGME
VLFKHTDEGFNAMPPRGGCFECTDKQLILAIIAMVPKQAQKGLLNNLLGHKEYKQ

Sequences:

>Translated_135_residues
MRPCYFVCILALFMFAMPGYSENHHPQEFLKSIAGTKDEGEKIFNHFCVNCHGTKPMISLGAPEIGNERAWGERLKQGME
VLFKHTDEGFNAMPPRGGCFECTDKQLILAIIAMVPKQAQKGLLNNLLGHKEYKQ
>Mature_135_residues
MRPCYFVCILALFMFAMPGYSENHHPQEFLKSIAGTKDEGEKIFNHFCVNCHGTKPMISLGAPEIGNERAWGERLKQGME
VLFKHTDEGFNAMPPRGGCFECTDKQLILAIIAMVPKQAQKGLLNNLLGHKEYKQ

Specific function: Unknown

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15230; Mature: 15230

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPCYFVCILALFMFAMPGYSENHHPQEFLKSIAGTKDEGEKIFNHFCVNCHGTKPMISL
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEC
GAPEIGNERAWGERLKQGMEVLFKHTDEGFNAMPPRGGCFECTDKQLILAIIAMVPKQAQ
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KGLLNNLLGHKEYKQ
HHHHHHHHCCHHCCC
>Mature Secondary Structure
MRPCYFVCILALFMFAMPGYSENHHPQEFLKSIAGTKDEGEKIFNHFCVNCHGTKPMISL
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEC
GAPEIGNERAWGERLKQGMEVLFKHTDEGFNAMPPRGGCFECTDKQLILAIIAMVPKQAQ
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KGLLNNLLGHKEYKQ
HHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA