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The map label for this gene is clpS

Identifier: 54296838

GI number: 54296838

Start: 988212

End: 988547

Strand: Direct

Name: clpS

Synonym: lpp0879

Alternate gene names: 54296838

Gene position: 988212-988547 (Clockwise)

Preceding gene: 54296837

Following gene: 54296839

Centisome position: 28.21

GC content: 38.1

Gene sequence:

>336_bases
ATGAGCAAGCAAAATTTAGAGGAAATAATACAAACAGGGATAGCTGATACAGAACTTAGCACAGAAATTAGCACAGCTAT
TAAACGGCCAAGAAAGTATAAGGTTTTATTGCTCAATGATGACTATACGCCAATGGATTTTGTGGTAGAGGTACTGAAGC
ACTTTTTTCATTTAAATGAGGAGGTTGCGATTCAGGTGATGTTACAGGTTCATTTTCAAGGGAAGGGGGTTTGTGGAGTG
TTTACAAGAGACATAGCAGAAACAAAAGTCGCCCTGGTAAATGAATACGCCAGAATGAATCAACATCCATTATTATCTAG
TATGGAACCGGAGTAA

Upstream 100 bases:

>100_bases
TATTGATTATTTCAATGACTAAATTTTTCATTAAAATTAGCTAAATTTACTGGCCAAATGCGTGTAGGGAGTCTATAAAA
ATAGTAAGAGGTTGTTAGTT

Downstream 100 bases:

>100_bases
ACTGGTGGTGGGTTGGTAAGGAGCAATGACAATGTTAAATAAAGAACTAGAATTCACCTTGAATCTAGCTTTCAAGGAAG
CAAAAGAAAAGCGTCATGAG

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSKQNLEEIIQTGIADTELSTEISTAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNEEVAIQVMLQVHFQGKGVCGV
FTRDIAETKVALVNEYARMNQHPLLSSMEPE

Sequences:

>Translated_111_residues
MSKQNLEEIIQTGIADTELSTEISTAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNEEVAIQVMLQVHFQGKGVCGV
FTRDIAETKVALVNEYARMNQHPLLSSMEPE
>Mature_110_residues
SKQNLEEIIQTGIADTELSTEISTAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNEEVAIQVMLQVHFQGKGVCGVF
TRDIAETKVALVNEYARMNQHPLLSSMEPE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=88, Percent_Identity=59.0909090909091, Blast_Score=121, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_LEGPA (Q5X6T6)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_123207.1
- ProteinModelPortal:   Q5X6T6
- SMR:   Q5X6T6
- STRING:   Q5X6T6
- GeneID:   3116897
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp0879
- LegioList:   lpp0879
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   VFPFGIA
- ProtClustDB:   CLSK832422
- BioCyc:   LPNE297246:LPP0879-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12722; Mature: 12591

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQNLEEIIQTGIADTELSTEISTAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNE
CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCH
EVAIQVMLQVHFQGKGVCGVFTRDIAETKVALVNEYARMNQHPLLSSMEPE
HHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SKQNLEEIIQTGIADTELSTEISTAIKRPRKYKVLLLNDDYTPMDFVVEVLKHFFHLNE
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCH
EVAIQVMLQVHFQGKGVCGVFTRDIAETKVALVNEYARMNQHPLLSSMEPE
HHHHHHHHHHEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA