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The map label for this gene is jag [H]

Identifier: 54027643

GI number: 54027643

Start: 6017998

End: 6018516

Strand: Reverse

Name: jag [H]

Synonym: nfa56690

Alternate gene names: 54027643

Gene position: 6018516-6017998 (Counterclockwise)

Preceding gene: 54027644

Following gene: 54027642

Centisome position: 99.96

GC content: 68.4

Gene sequence:

>519_bases
ATGACTGTTGAAACCGACGGAGTGAACGCCGATGCCGACGACCTCGTGAGCGATGCCGAGGAAGCGCTGATCGAAGAGGG
CGAGATCGCCGGCGACTATCTCGAGCAGCTGCTCGACGTGTTGGATTTCGACGGCGACATCGATCTGGACGTCGAAGGCG
ATCGCGCGGTCGTGAGCATCGACGGCGGTCGGGATCTGTCCAAGCTCGTGGGCCGTAACGGCGAGGTGCTCGATGCGCTC
CAGGAGCTGACCCGGCTGGCCGTCCAGCAGGTGACCGGTGTGCGCAGCCGCCTGATGCTCGACGTGGCGGGCTGGCGAGC
GAAGCGGCGCGAGGAGCTCAGCGCGCTGGGCACCGCCGCCGCCCAGCGCGTGCTGGAGTCCGGCGCTCCGGAGGCGCTGG
AACCGATGACCCCCTTCGAACGCAAGATCGTGCACGACGCCGTGGCCGCGGTCGAGGGTGTCAGCAGCGAGAGCGAAGGC
GTCGAGCCCAACCGGCACGTCGTCGTCGTGCCCGCCTGA

Upstream 100 bases:

>100_bases
CGGAAATCGGGTGGGCAGAAGCGCAACCCCAACCGGGGCAGGCCCAACCAGAAGCGCCGCCGCTGACCGCCACCGCCACC
CGTGAGATTGAGGAAACCAG

Downstream 100 bases:

>100_bases
CGACGCGCGGGTTTCCCACACCGGGACACCGGGTGATTGGATAGGCCTCTGGTCTTCGGACCGGGGGCCTTCTCCATGTC
ACGACCCACTCCCCCGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MTVETDGVNADADDLVSDAEEALIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAVVSIDGGRDLSKLVGRNGEVLDAL
QELTRLAVQQVTGVRSRLMLDVAGWRAKRREELSALGTAAAQRVLESGAPEALEPMTPFERKIVHDAVAAVEGVSSESEG
VEPNRHVVVVPA

Sequences:

>Translated_172_residues
MTVETDGVNADADDLVSDAEEALIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAVVSIDGGRDLSKLVGRNGEVLDAL
QELTRLAVQQVTGVRSRLMLDVAGWRAKRREELSALGTAAAQRVLESGAPEALEPMTPFERKIVHDAVAAVEGVSSESEG
VEPNRHVVVVPA
>Mature_171_residues
TVETDGVNADADDLVSDAEEALIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAVVSIDGGRDLSKLVGRNGEVLDALQ
ELTRLAVQQVTGVRSRLMLDVAGWRAKRREELSALGTAAAQRVLESGAPEALEPMTPFERKIVHDAVAAVEGVSSESEGV
EPNRHVVVVPA

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 18375; Mature: 18243

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVETDGVNADADDLVSDAEEALIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAVVSI
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEE
DGGRDLSKLVGRNGEVLDALQELTRLAVQQVTGVRSRLMLDVAGWRAKRREELSALGTAA
CCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQRVLESGAPEALEPMTPFERKIVHDAVAAVEGVSSESEGVEPNRHVVVVPA
HHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
TVETDGVNADADDLVSDAEEALIEEGEIAGDYLEQLLDVLDFDGDIDLDVEGDRAVVSI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEE
DGGRDLSKLVGRNGEVLDALQELTRLAVQQVTGVRSRLMLDVAGWRAKRREELSALGTAA
CCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQRVLESGAPEALEPMTPFERKIVHDAVAAVEGVSSESEGVEPNRHVVVVPA
HHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]