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The map label for this gene is gidB

Identifier: 54027642

GI number: 54027642

Start: 6017059

End: 6017841

Strand: Reverse

Name: gidB

Synonym: nfa56680

Alternate gene names: 54027642

Gene position: 6017841-6017059 (Counterclockwise)

Preceding gene: 54027643

Following gene: 54027641

Centisome position: 99.94

GC content: 72.54

Gene sequence:

>783_bases
GTGGAACCAGATCTCGGTGGAAGCGCCGCGCAGCCGCCCGAGTCGGATCCGCCCGCCGCAGCCGCCCTGGTCTTCGGCGA
CCGGCTCGACGTCGCCCGCCGCTACTACGACGCCCTCGCCACGGCGGGCGTCGAACGCGGACTCATCGGCCCCCGCGAGG
TGCCGCGCCTGTGGGACCGCCACATTCTCAACTGCGCCGTCGTCGCCGAACTGATGCCCGAGTCGGCCACCGTCGTCGAC
GTCGGCAGCGGCGCGGGCCTGCCCGGCATCCCCCTCGCCATCGCCCGCCCCGATCTGCGCATCACCCTCGTCGAACCCCT
GCTGCGCCGCACCGCCTTCCTCAGCGAGTTCATCGACGCGGCCGGCCTGGACATCACCGTCGTCCGCGGCCGCGCCGAAC
ACTCCGGCGTCATCAAGGAAGCCGGCGGCGCCGACGTCGTCACCTCCCGAGCCGTCGCCCCCCTCGCCAAGCTCGCCCAG
TGGTCGCTGCCCCTACTCCGCGACCACGGCCGCATGCTCGCCCTCAAGGGCGCCAGCGTCGCCGAGGAACTCGACCGTGA
TGCCGAAACTCTCGAAAGACTGGGCGCCGGGAAATTCGAAGTACTCGAATGCGGAGTAGGGATCGTCGCCACCCCGACCG
TCGTGTTCAGCGCCGAACTCCTCCCCCGCGGCGAACGCCCGTCCCGCCACCGCGAGAAGAAGCCCCGCAGGCAGGCGGGC
GCTCCCGGCGGGCGCGGAGGTGTCGCCGGCAAGGTGCGGAGGCGGGGGAAGAGCGAGCGGTAA

Upstream 100 bases:

>100_bases
CGGACCGGGGGCCTTCTCCATGTCACGACCCACTCCCCCGGCCGGGCGAGCCTCGCCGCACCCGGACCTTGTCGGACTCG
AGCACGGAAGGACGTTTCAC

Downstream 100 bases:

>100_bases
CGAGTGCGGGCCTCCTCCCGACCATCGAAGTCGCGGGCGCGTCATCGGGAGTGGTGCGCGGCGGGCGACATCGACTTCGG
AGTTCGGAATGCGTGCGGCT

Product: 16S rRNA methyltransferase GidB

Products: NA

Alternate protein names: 16S rRNA 7-methylguanosine methyltransferase; 16S rRNA m7G methyltransferase

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEPDLGGSAAQPPESDPPAAAALVFGDRLDVARRYYDALATAGVERGLIGPREVPRLWDRHILNCAVVAELMPESATVVD
VGSGAGLPGIPLAIARPDLRITLVEPLLRRTAFLSEFIDAAGLDITVVRGRAEHSGVIKEAGGADVVTSRAVAPLAKLAQ
WSLPLLRDHGRMLALKGASVAEELDRDAETLERLGAGKFEVLECGVGIVATPTVVFSAELLPRGERPSRHREKKPRRQAG
APGGRGGVAGKVRRRGKSER

Sequences:

>Translated_260_residues
MEPDLGGSAAQPPESDPPAAAALVFGDRLDVARRYYDALATAGVERGLIGPREVPRLWDRHILNCAVVAELMPESATVVD
VGSGAGLPGIPLAIARPDLRITLVEPLLRRTAFLSEFIDAAGLDITVVRGRAEHSGVIKEAGGADVVTSRAVAPLAKLAQ
WSLPLLRDHGRMLALKGASVAEELDRDAETLERLGAGKFEVLECGVGIVATPTVVFSAELLPRGERPSRHREKKPRRQAG
APGGRGGVAGKVRRRGKSER
>Mature_260_residues
MEPDLGGSAAQPPESDPPAAAALVFGDRLDVARRYYDALATAGVERGLIGPREVPRLWDRHILNCAVVAELMPESATVVD
VGSGAGLPGIPLAIARPDLRITLVEPLLRRTAFLSEFIDAAGLDITVVRGRAEHSGVIKEAGGADVVTSRAVAPLAKLAQ
WSLPLLRDHGRMLALKGASVAEELDRDAETLERLGAGKFEVLECGVGIVATPTVVFSAELLPRGERPSRHREKKPRRQAG
APGGRGGVAGKVRRRGKSER

Specific function: Specifically methylates the N7 position of guanosine in position 518 of 16S rRNA

COG id: COG0357

COG function: function code M; Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA methyltransferase rsmG family

Homologues:

Organism=Escherichia coli, GI1790179, Length=151, Percent_Identity=34.4370860927152, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSMG_NOCFA (Q5YMS1)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_121884.1
- ProteinModelPortal:   Q5YMS1
- SMR:   Q5YMS1
- GeneID:   3109646
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa56680
- NMPDR:   fig|247156.1.peg.5449
- HOGENOM:   HBG686577
- OMA:   VPRLWER
- ProtClustDB:   PRK00107
- BioCyc:   NFAR247156:NFA56680-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00074
- InterPro:   IPR003682
- PIRSF:   PIRSF003078
- TIGRFAMs:   TIGR00138

Pfam domain/function: PF02527 GidB

EC number: 2.1.-.- [C]

Molecular weight: Translated: 27541; Mature: 27541

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPDLGGSAAQPPESDPPAAAALVFGDRLDVARRYYDALATAGVERGLIGPREVPRLWDR
CCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
HILNCAVVAELMPESATVVDVGSGAGLPGIPLAIARPDLRITLVEPLLRRTAFLSEFIDA
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHH
AGLDITVVRGRAEHSGVIKEAGGADVVTSRAVAPLAKLAQWSLPLLRDHGRMLALKGASV
CCCEEEEEECCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECCCHH
AEELDRDAETLERLGAGKFEVLECGVGIVATPTVVFSAELLPRGERPSRHREKKPRRQAG
HHHHCCHHHHHHHHCCCCEEEHHCCCCEEECCHHHEEHHHCCCCCCCHHHHHHCHHHHCC
APGGRGGVAGKVRRRGKSER
CCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MEPDLGGSAAQPPESDPPAAAALVFGDRLDVARRYYDALATAGVERGLIGPREVPRLWDR
CCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
HILNCAVVAELMPESATVVDVGSGAGLPGIPLAIARPDLRITLVEPLLRRTAFLSEFIDA
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHH
AGLDITVVRGRAEHSGVIKEAGGADVVTSRAVAPLAKLAQWSLPLLRDHGRMLALKGASV
CCCEEEEEECCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECCCHH
AEELDRDAETLERLGAGKFEVLECGVGIVATPTVVFSAELLPRGERPSRHREKKPRRQAG
HHHHCCHHHHHHHHCCCCEEEHHCCCCEEECCHHHEEHHHCCCCCCCHHHHHHCHHHHCC
APGGRGGVAGKVRRRGKSER
CCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA