Click here to switch to the map view.

The map label for this gene is ybgL [C]

Identifier: 54027628

GI number: 54027628

Start: 5993756

End: 5994508

Strand: Reverse

Name: ybgL [C]

Synonym: nfa56540

Alternate gene names: 54027628

Gene position: 5994508-5993756 (Counterclockwise)

Preceding gene: 54027630

Following gene: 54027627

Centisome position: 99.56

GC content: 74.1

Gene sequence:

>753_bases
ATGCCGCTGGATCTCAACAGCGATCTGGGCGAGGGCTTCGGCTCGTGGACGATGGGCGACGACGCGGCCATGCTCGACCT
GGTGACCAGCGCCAACATCGCGTGCGGTTTCCACGCCGGTGACCCCTCGATCATGCGCCGCACCTGTGCGCTGGCCGCCG
AACGCGGCGTCCGCATCGGCGCCCACGTCGGCCACCGCGACCTGGTCGGTTTCGGCAGGCGCCGCATCGAGATCGACCCC
GCCGATCTGCGCGACGAGGTGCTGTACCAGATCGGCGCCCTGGACGGTTTCGCGCGAGCCGCGGGCAGCCGGGTGAGTTA
CGTGAAACCGCACGGGGCGCTCTATCACTCGGCGGCCGCGCGCCGCGACCTCGCCGACGCGGTGCTGGCGGCGATGACCG
ACCTCGATCCGAAGCTGGTGTTGCTGGGCCCGGCGGGTACCGAGCTCGAGCACGCCGCGACGGCGGCGGGCGTGCGGTTC
ATCGGCGAGGGATTCGCGGACCGCGCGTACACGCCGGAGGGCCGGTTGGCTCCCCGCGGCCGGGCGGGTGCGGTGCTCGA
CGCCGACGCGGCGGTGGCGCAGGCGGTAGCGATCGCGACCGAGGGGCGGGCTCGGGTGGTCGAGGGCGGCACCGTCGAGG
TGGGCGCGGGCAGCGTGTGCGTGCACGGCGACACCCCCGCCGCGGTCGAGATGGCGCGGCGGATCCGGGACGCGCTGGCC
GCCGCCGGTGTGGTCGTCGAGGCGTTCGTGTGA

Upstream 100 bases:

>100_bases
GTACTGGATCGGGGTAGCGGTCGGCGCGCACCGGATTGGCCGGCGGGCAGCGGCCGACGACAATGGAACCGCACACGCCG
CAGCGACGGGAGGAGTCACG

Downstream 100 bases:

>100_bases
GCGCGCCGCGGGCGTGACGGGGACCGGTGCCGTGGCGAAGGACGCCGAACAGTGGTGGATCCGGGCCGCCGGTGACCGCG
CCTGGCTGCTGTATCCCGGG

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MPLDLNSDLGEGFGSWTMGDDAAMLDLVTSANIACGFHAGDPSIMRRTCALAAERGVRIGAHVGHRDLVGFGRRRIEIDP
ADLRDEVLYQIGALDGFARAAGSRVSYVKPHGALYHSAAARRDLADAVLAAMTDLDPKLVLLGPAGTELEHAATAAGVRF
IGEGFADRAYTPEGRLAPRGRAGAVLDADAAVAQAVAIATEGRARVVEGGTVEVGAGSVCVHGDTPAAVEMARRIRDALA
AAGVVVEAFV

Sequences:

>Translated_250_residues
MPLDLNSDLGEGFGSWTMGDDAAMLDLVTSANIACGFHAGDPSIMRRTCALAAERGVRIGAHVGHRDLVGFGRRRIEIDP
ADLRDEVLYQIGALDGFARAAGSRVSYVKPHGALYHSAAARRDLADAVLAAMTDLDPKLVLLGPAGTELEHAATAAGVRF
IGEGFADRAYTPEGRLAPRGRAGAVLDADAAVAQAVAIATEGRARVVEGGTVEVGAGSVCVHGDTPAAVEMARRIRDALA
AAGVVVEAFV
>Mature_249_residues
PLDLNSDLGEGFGSWTMGDDAAMLDLVTSANIACGFHAGDPSIMRRTCALAAERGVRIGAHVGHRDLVGFGRRRIEIDPA
DLRDEVLYQIGALDGFARAAGSRVSYVKPHGALYHSAAARRDLADAVLAAMTDLDPKLVLLGPAGTELEHAATAAGVRFI
GEGFADRAYTPEGRLAPRGRAGAVLDADAAVAQAVAIATEGRARVVEGGTVEVGAGSVCVHGDTPAAVEMARRIRDALAA
AGVVVEAFV

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=249, Percent_Identity=45.3815261044177, Blast_Score=198, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y5654_NOCFA (Q5YMT5)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_121870.1
- ProteinModelPortal:   Q5YMT5
- SMR:   Q5YMT5
- GeneID:   3110314
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa56540
- NMPDR:   fig|247156.1.peg.5432
- HOGENOM:   HBG482818
- OMA:   GRRSMAC
- ProtClustDB:   PRK05406
- BioCyc:   NFAR247156:NFA56540-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 25808; Mature: 25676

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLDLNSDLGEGFGSWTMGDDAAMLDLVTSANIACGFHAGDPSIMRRTCALAAERGVRIG
CCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEE
AHVGHRDLVGFGRRRIEIDPADLRDEVLYQIGALDGFARAAGSRVSYVKPHGALYHSAAA
CCCCCHHHHHCCCEEEEECHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHH
RRDLADAVLAAMTDLDPKLVLLGPAGTELEHAATAAGVRFIGEGFADRAYTPEGRLAPRG
HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
RAGAVLDADAAVAQAVAIATEGRARVVEGGTVEVGAGSVCVHGDTPAAVEMARRIRDALA
CCCEEEECHHHHHHHHHHCCCCCEEEEECCEEEECCCCEEEECCCHHHHHHHHHHHHHHH
AAGVVVEAFV
HHHHHEEECC
>Mature Secondary Structure 
PLDLNSDLGEGFGSWTMGDDAAMLDLVTSANIACGFHAGDPSIMRRTCALAAERGVRIG
CCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEE
AHVGHRDLVGFGRRRIEIDPADLRDEVLYQIGALDGFARAAGSRVSYVKPHGALYHSAAA
CCCCCHHHHHCCCEEEEECHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCHHHHHHHH
RRDLADAVLAAMTDLDPKLVLLGPAGTELEHAATAAGVRFIGEGFADRAYTPEGRLAPRG
HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
RAGAVLDADAAVAQAVAIATEGRARVVEGGTVEVGAGSVCVHGDTPAAVEMARRIRDALA
CCCEEEECHHHHHHHHHHCCCCCEEEEECCEEEECCCCEEEECCCHHHHHHHHHHHHHHH
AAGVVVEAFV
HHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA