Click here to switch to the map view.

The map label for this gene is 54027539

Identifier: 54027539

GI number: 54027539

Start: 5897477

End: 5900356

Strand: Reverse

Name: 54027539

Synonym: nfa55650

Alternate gene names: NA

Gene position: 5900356-5897477 (Counterclockwise)

Preceding gene: 54027540

Following gene: 54027538

Centisome position: 97.99

GC content: 72.78

Gene sequence:

>2880_bases
ATGAGCACGCCGTGGGCGACCCGCACGCTCGGGCTCGCGTTGCGTCATCGGGACGGTGCGGCGGGGACCGCCGCACCCGA
GTTGTCCGTCGAGGTGCTGGTGCAGCCCGGATTGCGGCGCAACCCGAAGCGGGCGCACCTGCTCGTGTCCACTGTGTTGG
GCAAACATCTGCCCACCGATCCACGGGTGGTGCTGGCGGCCGGCAACCGGCTGGGTGATCTCGTGCTGGCGGCGCTGGCG
GGCACGTCCGCCGCGGAGCAGGCCGGCGCGAACGGACCGCGCCGCACCGGAACCCCGGCGCTCGTGCTCGGTTTCGCCGA
GACCGCCACCGGCCTCGGACACATCGTGGCCGCCAGGATCGGGGCCGCTTGCTACCTGCACTCCACCCGCCGGGACGTGC
CGTCGGTCGAAACCCTGACCGGGTTCGAAGAGGGGCACTCGCACGCCACCTCGCATCAGTTGCAGCCGGTGCCCGCGAGC
ATCTTCGCCGACGATCTGCCGCTCGTGCTGGTCGACGACGAGATCTCCACCGGGGCGACGGCACTCGACGCGGTGCGCGC
GCTGCACGCGTTCGCGCCGCGCTCGCACTACATTCTCGCGTCCCTGGTGGACATGCGCACCGATGCCGACCGGGCACGGT
TCGCGGCGGCCGCCCGGGAACTGGGGGCGCGCATCGACACCGTCTGCCTGGCGGCCGGAGCGACCGTGCTGCCCGACGAT
TTGATCGACGCGGTTCAGGCGCTGCCCGAGCCCGCGTTGAACCCGGTCGCCGCGCAGCGCGGTTCGTTCGACCGGCTCGA
ACTGCCCTGGCCGGACTCGGTGCCCGAGGGTGGGCGGCACGGGTTCCTGCGTGCCGACACACCGGCGTTCGAGGCGGCCG
TCGCCGCCGCGGGCAAGGCGCTGCGCGCGCGGTTGGAGGTCGCCGCGCCCGGCCGCCCGGTCGTCGTGCTCGGGCACGAG
GAACTGATGTACCTGCCGTTGCGGCTGGCCGAATCGTTGGCCGGCGCGGGCGTTCCCACGCGCTTCCAGACGACGACCCG
CTCCCCGGCCTACGTGGTGGACGAACCCGGCTACCCGCTGCGCCGCGGATTCCGTTTCCACGCACCGGAACCCGGGCAGG
CCGAGCCGCGCTACCTGTACAACGCCCACTGGTTCACCGACTACGACGGGGACTTGGCGGCGCTGAGCACGGCGGAGGGC
GCCGAAGGGACGGCCGCCGAATCCGCTGTCCGCCACGGCGGCTCCGATCCGGCAGCGGCGCAGGCGAGCGCCGGCGGCGT
TGGACGCCGGCATCATTCGATCGCGGTCGGGTCGGCGCTGGACCCGATTCTGGTCATGGTCGTGGATCAGCCCGCCGACA
CCCCGGAACTCGTGTCCCCCGGCGGCGTGGTGGACGTACTCACCGCCTCGGGCGCGGATGTGCTGGTCGCGGTCGTGCCC
GGTGCGGATCCCCGCACATTGCACGCCGAGCGGGCCGCAGCCGAGGGTCCTGCCGAGTGCACCGCTGCCGAGCACATCGC
CGCCGCCGAGGGGCATGCCACCGACCGCACCGCCCAGGGGCCTGCCGTCGAGCGCACCGCTGCCGAGCGCACCGCCGCCG
CCCAGGGGCCTACCGCCGAGCGCACCGCCGAGGGTCCTGCCGCCGAGCGCATCGCCGAGGGGGCTGCCGTCGAGCGGACT
ATCCCCGAGGACACCGCCACCGACCACACCGCCGACCAACCGATCGCACCGCACGGCCGCCGCCCGGACCGATCCTTCCC
CCGTCCGCTGCACGGTCCCGAGTTCGGCTCGTACGCCCCCGGCGAGGTGTCCTGGCTGCTCAAGGATCTCTCCGACGTGG
ACCTCGAGGCCGATGTGGCCGAGCGGGAGCGGCGGATCCAGGCCGGCGTCGCCCACTACGCGGAGACGCTGCCGATCGAA
TACCAGCCCGATGCCGAGTACCGGGAGCTGTTCGAGAAGGTGCTCGCCGAGAGTGCGGAGCGGCTGGCGTTGGCCGTGGC
GACGGTGGCCGAACTGGTCGTCGCCGAGCGTGGCCCGGACGTGACGCTGGTGTCGCTGGCGCGGGCGGGCACGCCGATCG
GCATCCTGATGAAACGCTGGCTGGCAGCGCAGGATCGCAGCGGTGCCCCGGCGCTGGACGTGCCGCACTACGCGGTGTCC
ATCGTGCGCGATCGCGGCATCGACGCGGTGGCGCTGGACTACCTCGCCGCCCACCACGATCCGGCCTCGGTGGTGTTCGT
CGACGGTTGGACCGGGAAGGGCGCCATCGCGAGGGAGCTGTCCGCGGCGCTGGCCGACTACCACGCCGCGGGCGGTGCCC
GCTTCGACGACGACCTGGCGGTGCTGGCCGACCCCGGTTGCTGCGTGCGGACCTACGGCACCCGCGACGACTTCCTGATC
GCCTCGGCCTGCCTGAATTCCACCGTCTCCGGCCTGGTGTCGCGCACGGTGCTCAACGACACACTGATCGGGCCGCGTGA
TTTCCACGGTGCCAAGTTCTACCGGCAGCTGGCGGACGAGGACGTGTCCGGCCGCCTGCTGGACACGGTGGCCGCGGCCT
TCGACACCGTCCGTCCGCGCGTGCCCGCCGAACTGGCGAAGGTGCGCGGCGGTGACCGGACGCCGACCTGGTCGGGGTGG
GCCTCGGTGGAGCAGGTGCGCGCCGAATACGGCATCGGCAGCGTCAATTTCGTCAAACCCGGCGTCGGCGAGACGACGCG
GGTGCTGCTGCGCCGGGTGCCGTGGCGGGTGCTGGTCCGCGAGGCCGACGCCCCCGAGCACGCGCACATCAGGATGCTCG
CGGCCGCCCGCGGCGTTCCGGTGGAAGTCGTGCCCGATCTGGCGTATTCGTGTATGGGATTGATCAAGGAAGTGCGGTGA

Upstream 100 bases:

>100_bases
ATCGCAGCTGGGCCGGGCAGACCATGCTGCGGGCCAGGGTATTCGGGGTGGCGAACAAGGGAGTGTCCTTCGTGGATCTG
CTGACGGCGTTGGTGAAGGT

Downstream 100 bases:

>100_bases
GCGTGGCGATGTTCCAGCGAAGACCCCGGCTCCAGGCGCTCGTCGCCACCGACCTGGACCGGACGATGATCTACTCGCGC
AACGCGTTCAGCACCACCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 959; Mature: 958

Protein sequence:

>959_residues
MSTPWATRTLGLALRHRDGAAGTAAPELSVEVLVQPGLRRNPKRAHLLVSTVLGKHLPTDPRVVLAAGNRLGDLVLAALA
GTSAAEQAGANGPRRTGTPALVLGFAETATGLGHIVAARIGAACYLHSTRRDVPSVETLTGFEEGHSHATSHQLQPVPAS
IFADDLPLVLVDDEISTGATALDAVRALHAFAPRSHYILASLVDMRTDADRARFAAAARELGARIDTVCLAAGATVLPDD
LIDAVQALPEPALNPVAAQRGSFDRLELPWPDSVPEGGRHGFLRADTPAFEAAVAAAGKALRARLEVAAPGRPVVVLGHE
ELMYLPLRLAESLAGAGVPTRFQTTTRSPAYVVDEPGYPLRRGFRFHAPEPGQAEPRYLYNAHWFTDYDGDLAALSTAEG
AEGTAAESAVRHGGSDPAAAQASAGGVGRRHHSIAVGSALDPILVMVVDQPADTPELVSPGGVVDVLTASGADVLVAVVP
GADPRTLHAERAAAEGPAECTAAEHIAAAEGHATDRTAQGPAVERTAAERTAAAQGPTAERTAEGPAAERIAEGAAVERT
IPEDTATDHTADQPIAPHGRRPDRSFPRPLHGPEFGSYAPGEVSWLLKDLSDVDLEADVAERERRIQAGVAHYAETLPIE
YQPDAEYRELFEKVLAESAERLALAVATVAELVVAERGPDVTLVSLARAGTPIGILMKRWLAAQDRSGAPALDVPHYAVS
IVRDRGIDAVALDYLAAHHDPASVVFVDGWTGKGAIARELSAALADYHAAGGARFDDDLAVLADPGCCVRTYGTRDDFLI
ASACLNSTVSGLVSRTVLNDTLIGPRDFHGAKFYRQLADEDVSGRLLDTVAAAFDTVRPRVPAELAKVRGGDRTPTWSGW
ASVEQVRAEYGIGSVNFVKPGVGETTRVLLRRVPWRVLVREADAPEHAHIRMLAAARGVPVEVVPDLAYSCMGLIKEVR

Sequences:

>Translated_959_residues
MSTPWATRTLGLALRHRDGAAGTAAPELSVEVLVQPGLRRNPKRAHLLVSTVLGKHLPTDPRVVLAAGNRLGDLVLAALA
GTSAAEQAGANGPRRTGTPALVLGFAETATGLGHIVAARIGAACYLHSTRRDVPSVETLTGFEEGHSHATSHQLQPVPAS
IFADDLPLVLVDDEISTGATALDAVRALHAFAPRSHYILASLVDMRTDADRARFAAAARELGARIDTVCLAAGATVLPDD
LIDAVQALPEPALNPVAAQRGSFDRLELPWPDSVPEGGRHGFLRADTPAFEAAVAAAGKALRARLEVAAPGRPVVVLGHE
ELMYLPLRLAESLAGAGVPTRFQTTTRSPAYVVDEPGYPLRRGFRFHAPEPGQAEPRYLYNAHWFTDYDGDLAALSTAEG
AEGTAAESAVRHGGSDPAAAQASAGGVGRRHHSIAVGSALDPILVMVVDQPADTPELVSPGGVVDVLTASGADVLVAVVP
GADPRTLHAERAAAEGPAECTAAEHIAAAEGHATDRTAQGPAVERTAAERTAAAQGPTAERTAEGPAAERIAEGAAVERT
IPEDTATDHTADQPIAPHGRRPDRSFPRPLHGPEFGSYAPGEVSWLLKDLSDVDLEADVAERERRIQAGVAHYAETLPIE
YQPDAEYRELFEKVLAESAERLALAVATVAELVVAERGPDVTLVSLARAGTPIGILMKRWLAAQDRSGAPALDVPHYAVS
IVRDRGIDAVALDYLAAHHDPASVVFVDGWTGKGAIARELSAALADYHAAGGARFDDDLAVLADPGCCVRTYGTRDDFLI
ASACLNSTVSGLVSRTVLNDTLIGPRDFHGAKFYRQLADEDVSGRLLDTVAAAFDTVRPRVPAELAKVRGGDRTPTWSGW
ASVEQVRAEYGIGSVNFVKPGVGETTRVLLRRVPWRVLVREADAPEHAHIRMLAAARGVPVEVVPDLAYSCMGLIKEVR
>Mature_958_residues
STPWATRTLGLALRHRDGAAGTAAPELSVEVLVQPGLRRNPKRAHLLVSTVLGKHLPTDPRVVLAAGNRLGDLVLAALAG
TSAAEQAGANGPRRTGTPALVLGFAETATGLGHIVAARIGAACYLHSTRRDVPSVETLTGFEEGHSHATSHQLQPVPASI
FADDLPLVLVDDEISTGATALDAVRALHAFAPRSHYILASLVDMRTDADRARFAAAARELGARIDTVCLAAGATVLPDDL
IDAVQALPEPALNPVAAQRGSFDRLELPWPDSVPEGGRHGFLRADTPAFEAAVAAAGKALRARLEVAAPGRPVVVLGHEE
LMYLPLRLAESLAGAGVPTRFQTTTRSPAYVVDEPGYPLRRGFRFHAPEPGQAEPRYLYNAHWFTDYDGDLAALSTAEGA
EGTAAESAVRHGGSDPAAAQASAGGVGRRHHSIAVGSALDPILVMVVDQPADTPELVSPGGVVDVLTASGADVLVAVVPG
ADPRTLHAERAAAEGPAECTAAEHIAAAEGHATDRTAQGPAVERTAAERTAAAQGPTAERTAEGPAAERIAEGAAVERTI
PEDTATDHTADQPIAPHGRRPDRSFPRPLHGPEFGSYAPGEVSWLLKDLSDVDLEADVAERERRIQAGVAHYAETLPIEY
QPDAEYRELFEKVLAESAERLALAVATVAELVVAERGPDVTLVSLARAGTPIGILMKRWLAAQDRSGAPALDVPHYAVSI
VRDRGIDAVALDYLAAHHDPASVVFVDGWTGKGAIARELSAALADYHAAGGARFDDDLAVLADPGCCVRTYGTRDDFLIA
SACLNSTVSGLVSRTVLNDTLIGPRDFHGAKFYRQLADEDVSGRLLDTVAAAFDTVRPRVPAELAKVRGGDRTPTWSGWA
SVEQVRAEYGIGSVNFVKPGVGETTRVLLRRVPWRVLVREADAPEHAHIRMLAAARGVPVEVVPDLAYSCMGLIKEVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 101017; Mature: 100885

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPWATRTLGLALRHRDGAAGTAAPELSVEVLVQPGLRRNPKRAHLLVSTVLGKHLPTD
CCCCCCHHHHHHEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
PRVVLAAGNRLGDLVLAALAGTSAAEQAGANGPRRTGTPALVLGFAETATGLGHIVAARI
CEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHH
GAACYLHSTRRDVPSVETLTGFEEGHSHATSHQLQPVPASIFADDLPLVLVDDEISTGAT
HHHHEEEHHHCCCCCHHHHHCHHHCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCHH
ALDAVRALHAFAPRSHYILASLVDMRTDADRARFAAAARELGARIDTVCLAAGATVLPDD
HHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHH
LIDAVQALPEPALNPVAAQRGSFDRLELPWPDSVPEGGRHGFLRADTPAFEAAVAAAGKA
HHHHHHHCCCCCCCCHHHHCCCCCEECCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHH
LRARLEVAAPGRPVVVLGHEELMYLPLRLAESLAGAGVPTRFQTTTRSPAYVVDEPGYPL
HHHHEEECCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCHH
RRGFRFHAPEPGQAEPRYLYNAHWFTDYDGDLAALSTAEGAEGTAAESAVRHGGSDPAAA
HCCCEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHH
QASAGGVGRRHHSIAVGSALDPILVMVVDQPADTPELVSPGGVVDVLTASGADVLVAVVP
HCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC
GADPRTLHAERAAAEGPAECTAAEHIAAAEGHATDRTAQGPAVERTAAERTAAAQGPTAE
CCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
RTAEGPAAERIAEGAAVERTIPEDTATDHTADQPIAPHGRRPDRSFPRPLHGPEFGSYAP
HCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GEVSWLLKDLSDVDLEADVAERERRIQAGVAHYAETLPIEYQPDAEYRELFEKVLAESAE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHH
RLALAVATVAELVVAERGPDVTLVSLARAGTPIGILMKRWLAAQDRSGAPALDVPHYAVS
HHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
IVRDRGIDAVALDYLAAHHDPASVVFVDGWTGKGAIARELSAALADYHAAGGARFDDDLA
HHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
VLADPGCCVRTYGTRDDFLIASACLNSTVSGLVSRTVLNDTLIGPRDFHGAKFYRQLADE
EEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
DVSGRLLDTVAAAFDTVRPRVPAELAKVRGGDRTPTWSGWASVEQVRAEYGIGSVNFVKP
CCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECC
GVGETTRVLLRRVPWRVLVREADAPEHAHIRMLAAARGVPVEVVPDLAYSCMGLIKEVR
CCCHHHHHHHHHCCHHEEEECCCCCCHHHEEEEHHHCCCCEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STPWATRTLGLALRHRDGAAGTAAPELSVEVLVQPGLRRNPKRAHLLVSTVLGKHLPTD
CCCCCHHHHHHEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
PRVVLAAGNRLGDLVLAALAGTSAAEQAGANGPRRTGTPALVLGFAETATGLGHIVAARI
CEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHH
GAACYLHSTRRDVPSVETLTGFEEGHSHATSHQLQPVPASIFADDLPLVLVDDEISTGAT
HHHHEEEHHHCCCCCHHHHHCHHHCCCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCHH
ALDAVRALHAFAPRSHYILASLVDMRTDADRARFAAAARELGARIDTVCLAAGATVLPDD
HHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHH
LIDAVQALPEPALNPVAAQRGSFDRLELPWPDSVPEGGRHGFLRADTPAFEAAVAAAGKA
HHHHHHHCCCCCCCCHHHHCCCCCEECCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHH
LRARLEVAAPGRPVVVLGHEELMYLPLRLAESLAGAGVPTRFQTTTRSPAYVVDEPGYPL
HHHHEEECCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCHH
RRGFRFHAPEPGQAEPRYLYNAHWFTDYDGDLAALSTAEGAEGTAAESAVRHGGSDPAAA
HCCCEECCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHH
QASAGGVGRRHHSIAVGSALDPILVMVVDQPADTPELVSPGGVVDVLTASGADVLVAVVP
HCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC
GADPRTLHAERAAAEGPAECTAAEHIAAAEGHATDRTAQGPAVERTAAERTAAAQGPTAE
CCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCH
RTAEGPAAERIAEGAAVERTIPEDTATDHTADQPIAPHGRRPDRSFPRPLHGPEFGSYAP
HCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GEVSWLLKDLSDVDLEADVAERERRIQAGVAHYAETLPIEYQPDAEYRELFEKVLAESAE
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHH
RLALAVATVAELVVAERGPDVTLVSLARAGTPIGILMKRWLAAQDRSGAPALDVPHYAVS
HHHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
IVRDRGIDAVALDYLAAHHDPASVVFVDGWTGKGAIARELSAALADYHAAGGARFDDDLA
HHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
VLADPGCCVRTYGTRDDFLIASACLNSTVSGLVSRTVLNDTLIGPRDFHGAKFYRQLADE
EEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
DVSGRLLDTVAAAFDTVRPRVPAELAKVRGGDRTPTWSGWASVEQVRAEYGIGSVNFVKP
CCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECC
GVGETTRVLLRRVPWRVLVREADAPEHAHIRMLAAARGVPVEVVPDLAYSCMGLIKEVR
CCCHHHHHHHHHCCHHEEEECCCCCCHHHEEEEHHHCCCCEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA