Click here to switch to the map view.

The map label for this gene is 54027538

Identifier: 54027538

GI number: 54027538

Start: 5896626

End: 5897480

Strand: Reverse

Name: 54027538

Synonym: nfa55640

Alternate gene names: NA

Gene position: 5897480-5896626 (Counterclockwise)

Preceding gene: 54027539

Following gene: 54027534

Centisome position: 97.94

GC content: 69.71

Gene sequence:

>855_bases
GTGAGCGTGGCGATGTTCCAGCGAAGACCCCGGCTCCAGGCGCTCGTCGCCACCGACCTGGACCGGACGATGATCTACTC
GCGCAACGCGTTCAGCACCACCGCCGAGATACCCACCGTATGCGTGGAACACCTCGAGGGCGCTCCCCTGTCGTTCATGA
CCACCGCCGCCGCGCTGCGCATGCAGCGGCTCACCGAACCCGCCGCGGTGATCCCCACGACCACCCGAACCATCAAGCAG
TTCACCAGGATCCAGTTGCCGGGCGCGCCGTGGCGGTACGCCGTCACCAGCAACGGCGGCAACATTCTGGTCGACGGCGT
CCCGGACATGCGCTGGCGCATCGACATCGACGCCAAGGTCCGTGCCGGCGGTGCCACCCTGTCGGAGGTGAGCGCCGAGC
TGCGCAGGCGCATCGACGACAGCTGGGTGAGCAAGTTCCGCATCGCCGACCACCTGTTCTGCTACCTGGTGGTGAAACCG
AAGGCCGTCCCCGCGGATTTCCTGGCCGAATGGGACCGGTGGTGCCGGGACCGCGGCTGGACCGCCTCCCAGCAGGGCCG
CAAGATCTACACGATGCCGCAGGCGGTGTGCAAGAGCGTCGCCGTCGCCGAAGTGCGTAACCGGATGCTCGCGGCGGGCG
AACTCGCCGACACCGCGCGCACGCTCGCCGCCGGTGACGGCGCGCTGGACGCGGAGATGCTGCGCGCCGCCGACCGCGCC
ATCCGGCCCCGGCACGGCGAACTGGAGCAGCTCAACTGGACCAGCCCCAACCTCACCGTCACCAAGGCCAGCGGCATCCT
CGCCGGTGAGGAGATCGTCGACTGGTTCATCGAGGCGGCCCGGCCCGCCGCCTGA

Upstream 100 bases:

>100_bases
AGCACGCGCACATCAGGATGCTCGCGGCCGCCCGCGGCGTTCCGGTGGAAGTCGTGCCCGATCTGGCGTATTCGTGTATG
GGATTGATCAAGGAAGTGCG

Downstream 100 bases:

>100_bases
CGGCTACCAGCCCTGCTGCTGCTGTTGCCCGAGTTGGGCGGCGATGGTGGCCTGCAGGCGCTGCAGCCCGCCGACGGTGA
TCCCGCTCTGCAGCTGGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSVAMFQRRPRLQALVATDLDRTMIYSRNAFSTTAEIPTVCVEHLEGAPLSFMTTAAALRMQRLTEPAAVIPTTTRTIKQ
FTRIQLPGAPWRYAVTSNGGNILVDGVPDMRWRIDIDAKVRAGGATLSEVSAELRRRIDDSWVSKFRIADHLFCYLVVKP
KAVPADFLAEWDRWCRDRGWTASQQGRKIYTMPQAVCKSVAVAEVRNRMLAAGELADTARTLAAGDGALDAEMLRAADRA
IRPRHGELEQLNWTSPNLTVTKASGILAGEEIVDWFIEAARPAA

Sequences:

>Translated_284_residues
MSVAMFQRRPRLQALVATDLDRTMIYSRNAFSTTAEIPTVCVEHLEGAPLSFMTTAAALRMQRLTEPAAVIPTTTRTIKQ
FTRIQLPGAPWRYAVTSNGGNILVDGVPDMRWRIDIDAKVRAGGATLSEVSAELRRRIDDSWVSKFRIADHLFCYLVVKP
KAVPADFLAEWDRWCRDRGWTASQQGRKIYTMPQAVCKSVAVAEVRNRMLAAGELADTARTLAAGDGALDAEMLRAADRA
IRPRHGELEQLNWTSPNLTVTKASGILAGEEIVDWFIEAARPAA
>Mature_283_residues
SVAMFQRRPRLQALVATDLDRTMIYSRNAFSTTAEIPTVCVEHLEGAPLSFMTTAAALRMQRLTEPAAVIPTTTRTIKQF
TRIQLPGAPWRYAVTSNGGNILVDGVPDMRWRIDIDAKVRAGGATLSEVSAELRRRIDDSWVSKFRIADHLFCYLVVKPK
AVPADFLAEWDRWCRDRGWTASQQGRKIYTMPQAVCKSVAVAEVRNRMLAAGELADTARTLAAGDGALDAEMLRAADRAI
RPRHGELEQLNWTSPNLTVTKASGILAGEEIVDWFIEAARPAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31468; Mature: 31337

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAMFQRRPRLQALVATDLDRTMIYSRNAFSTTAEIPTVCVEHLEGAPLSFMTTAAALR
CCCHHHHCCCHHHHHHHHCCHHHHEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
MQRLTEPAAVIPTTTRTIKQFTRIQLPGAPWRYAVTSNGGNILVDGVPDMRWRIDIDAKV
HHHHCCCCEECCCCHHHHHHHHHEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCEE
RAGGATLSEVSAELRRRIDDSWVSKFRIADHLFCYLVVKPKAVPADFLAEWDRWCRDRGW
ECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCC
TASQQGRKIYTMPQAVCKSVAVAEVRNRMLAAGELADTARTLAAGDGALDAEMLRAADRA
CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
IRPRHGELEQLNWTSPNLTVTKASGILAGEEIVDWFIEAARPAA
CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVAMFQRRPRLQALVATDLDRTMIYSRNAFSTTAEIPTVCVEHLEGAPLSFMTTAAALR
CCHHHHCCCHHHHHHHHCCHHHHEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
MQRLTEPAAVIPTTTRTIKQFTRIQLPGAPWRYAVTSNGGNILVDGVPDMRWRIDIDAKV
HHHHCCCCEECCCCHHHHHHHHHEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCEE
RAGGATLSEVSAELRRRIDDSWVSKFRIADHLFCYLVVKPKAVPADFLAEWDRWCRDRGW
ECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCC
TASQQGRKIYTMPQAVCKSVAVAEVRNRMLAAGELADTARTLAAGDGALDAEMLRAADRA
CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
IRPRHGELEQLNWTSPNLTVTKASGILAGEEIVDWFIEAARPAA
CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA