Click here to switch to the map view.

The map label for this gene is 54027529

Identifier: 54027529

GI number: 54027529

Start: 5885003

End: 5885878

Strand: Reverse

Name: 54027529

Synonym: nfa55550

Alternate gene names: NA

Gene position: 5885878-5885003 (Counterclockwise)

Preceding gene: 54027533

Following gene: 54027528

Centisome position: 97.75

GC content: 74.77

Gene sequence:

>876_bases
TTGCGGCGCAGTGCTTCCCCGTCCGGTTATCCCGGTCACACCCGTGCCCGTGCCGACGACCGCCGCCGTGTCCACGCCCA
ACTCGACCACGCCCGCGTCGAAGGCCAGCTGACGGAGGACGAGCATCACGCCCGCCGCGACCTGGCCGACGAGGCCCGCA
CCCTCGGCGACCTGGCCGTCCTGGTCGACGACCTGCGCCTGGCGCCGAGCGCCGAGCCCCGCCCGCCGCGCTCGCGCCGG
CGGCACTGGTTCCAGCTGGGCGTGGCGGCCGCCGCCGTGGTGGCCGCGGTGGCGACGGCCACCCTGACCGCGCGGGCGGT
GCGGCCCGAACCGCCCGCCCCGGTCGCCGCCCCGGTGGCTCCGGTCGCCGACCTCGACGGCGTCGCACCGGTGGTGATCG
GCACCCCGAACCTGCTCACCGAGACCGGCCTGCGCCAGCTCGTGGCGGACCTGCGCACCCGGTTCGGTGACCCGACCGTC
GACGAACTGTCCGTTCACCCCGAGTTGGCCTCGCTGACCAAGGCGGTGCCGGGCCAACCCAACCGAAAGGTCGGCTACTC
CTACCGCTGGGGCTTCGCGCCGGACGGTGCCCCCGTCACCCGCGAACCCGACACCCCGACCGTCGACCTCACCGCGCTCG
ACCTGACGGCACTGGCGGCACTGATCGCCGAGGCGCCCGCCACCCTGCGCGTGCCCGACGGCACGACCAGCCACATCGGC
GTGGAGATCATGGACAACGACTTCTACGCCGCCTACGGCCTGCCGCGCGGCGCCGTGGCGGTGAGCGTCTACGCGCGCAA
CGAGGCACGCGAGAGCGGCCATCTCCTCGCGGCGGCCGACGGCAGGATCGCCCGTACCTGGGAATTCGGGAGGTAG

Upstream 100 bases:

>100_bases
GAAAACCGTCGGTGACCTGGCCGGGTTGCTCGCCGATCTGCAGGTACCGGCCACGGTCCGCGACCTGGTACCGTCCTCCG
CCACGGCCCCGCGAAAGCCT

Downstream 100 bases:

>100_bases
GCGATGAGCTCCGCCCCGTCCGGCGCACTGCGCGCCGCCGACTCCGACCGCGCCGACGTGTGCGGGATGCTCGACGCCGC
GCTGGCCGACGGCCAGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRRSASPSGYPGHTRARADDRRRVHAQLDHARVEGQLTEDEHHARRDLADEARTLGDLAVLVDDLRLAPSAEPRPPRSRR
RHWFQLGVAAAAVVAAVATATLTARAVRPEPPAPVAAPVAPVADLDGVAPVVIGTPNLLTETGLRQLVADLRTRFGDPTV
DELSVHPELASLTKAVPGQPNRKVGYSYRWGFAPDGAPVTREPDTPTVDLTALDLTALAALIAEAPATLRVPDGTTSHIG
VEIMDNDFYAAYGLPRGAVAVSVYARNEARESGHLLAAADGRIARTWEFGR

Sequences:

>Translated_291_residues
MRRSASPSGYPGHTRARADDRRRVHAQLDHARVEGQLTEDEHHARRDLADEARTLGDLAVLVDDLRLAPSAEPRPPRSRR
RHWFQLGVAAAAVVAAVATATLTARAVRPEPPAPVAAPVAPVADLDGVAPVVIGTPNLLTETGLRQLVADLRTRFGDPTV
DELSVHPELASLTKAVPGQPNRKVGYSYRWGFAPDGAPVTREPDTPTVDLTALDLTALAALIAEAPATLRVPDGTTSHIG
VEIMDNDFYAAYGLPRGAVAVSVYARNEARESGHLLAAADGRIARTWEFGR
>Mature_291_residues
MRRSASPSGYPGHTRARADDRRRVHAQLDHARVEGQLTEDEHHARRDLADEARTLGDLAVLVDDLRLAPSAEPRPPRSRR
RHWFQLGVAAAAVVAAVATATLTARAVRPEPPAPVAAPVAPVADLDGVAPVVIGTPNLLTETGLRQLVADLRTRFGDPTV
DELSVHPELASLTKAVPGQPNRKVGYSYRWGFAPDGAPVTREPDTPTVDLTALDLTALAALIAEAPATLRVPDGTTSHIG
VEIMDNDFYAAYGLPRGAVAVSVYARNEARESGHLLAAADGRIARTWEFGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012551 [H]

Pfam domain/function: PF08044 DUF1707 [H]

EC number: NA

Molecular weight: Translated: 31152; Mature: 31152

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRSASPSGYPGHTRARADDRRRVHAQLDHARVEGQLTEDEHHARRDLADEARTLGDLAV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LVDDLRLAPSAEPRPPRSRRRHWFQLGVAAAAVVAAVATATLTARAVRPEPPAPVAAPVA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PVADLDGVAPVVIGTPNLLTETGLRQLVADLRTRFGDPTVDELSVHPELASLTKAVPGQP
CHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCCCCC
NRKVGYSYRWGFAPDGAPVTREPDTPTVDLTALDLTALAALIAEAPATLRVPDGTTSHIG
CCCCCCEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCCCCEEE
VEIMDNDFYAAYGLPRGAVAVSVYARNEARESGHLLAAADGRIARTWEFGR
EEEECCCEEEECCCCCCCEEEEEEECCCCHHCCCEEEECCCCEEECCCCCC
>Mature Secondary Structure
MRRSASPSGYPGHTRARADDRRRVHAQLDHARVEGQLTEDEHHARRDLADEARTLGDLAV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LVDDLRLAPSAEPRPPRSRRRHWFQLGVAAAAVVAAVATATLTARAVRPEPPAPVAAPVA
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PVADLDGVAPVVIGTPNLLTETGLRQLVADLRTRFGDPTVDELSVHPELASLTKAVPGQP
CHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCCCCC
NRKVGYSYRWGFAPDGAPVTREPDTPTVDLTALDLTALAALIAEAPATLRVPDGTTSHIG
CCCCCCEEECCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCCCCEEE
VEIMDNDFYAAYGLPRGAVAVSVYARNEARESGHLLAAADGRIARTWEFGR
EEEECCCEEEECCCCCCCEEEEEEECCCCHHCCCEEEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]