Click here to switch to the map view.

The map label for this gene is 54027528

Identifier: 54027528

GI number: 54027528

Start: 5884196

End: 5884999

Strand: Reverse

Name: 54027528

Synonym: nfa55540

Alternate gene names: NA

Gene position: 5884999-5884196 (Counterclockwise)

Preceding gene: 54027529

Following gene: 54027527

Centisome position: 97.74

GC content: 75.87

Gene sequence:

>804_bases
ATGAGCTCCGCCCCGTCCGGCGCACTGCGCGCCGCCGACTCCGACCGCGCCGACGTGTGCGGGATGCTCGACGCCGCGCT
GGCCGACGGCCAGCTCACCGCCGCCGAACACGCCACCCGCACGTCCGCGGCCATGCGCGCGGTCACCTTCGCCGACCTCG
AAACCCTGATCGCCGACCTGCAGCTGCCCGAAGCCCTGGTCGACACCCCCGTCGTGCGCGCGGACCTGCGCCGCCCGCAC
CGGCTGCGCATGCCGCTCGCGATCGTCGCCGGGGCCGCGGCGCTCGGCGCGGTGGTCGGGCTGGCCGTCGGATGCGCGGG
TGGCGGTGCCGAGACCGCGGCGGAGGCCGGCCGGCCGGCCTTCACCACACCGAACGGCCTGGCGCGGTTCATCGCCGACT
ACCGTGCCCACTTCGGCGACACCTCGGTCGACGAGGTCACCCTGCACCCCGAGCATGTGAGCATCGTCCGACGCGCCGCC
GACAACCCCGCGCAGGAGGACCGCTGGGACTACGACGGGGAGTTCGACCACTCGGTCACCACCTCGCGCGATCCGGACGA
CCCGACGATCGATCTGGCCGCACTCGACCTGCCCGCGATCGCGGCCGTGCTGGCGGGCAGCACGCGGACCGTCGGGGTGC
CCGAGGGCGCCGTCACGCACCTGGGCATCGGGCCCAGCGAGCACGCGGGCATCGCGGGCGGCCTCGAGGTGCAGATCTTC
GTCGCCGACGAGCGCGGCGGCCGCGGCGACCTGACCGTCGCCGCCGACGGCGCACCCGTGGCGGTGTTCCCCGCCGGTCG
CTGA

Upstream 100 bases:

>100_bases
GGTGAGCGTCTACGCGCGCAACGAGGCACGCGAGAGCGGCCATCTCCTCGCGGCGGCCGACGGCAGGATCGCCCGTACCT
GGGAATTCGGGAGGTAGGCG

Downstream 100 bases:

>100_bases
GCCGGCCCCGGCACGTTTGCGCGCCGCCACCTGTGGTTATCCGTCCCCTGTGGGTCTGACCCTGTGCCTGGTTATATCGC
TCCGATATAGTGGGCAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSSAPSGALRAADSDRADVCGMLDAALADGQLTAAEHATRTSAAMRAVTFADLETLIADLQLPEALVDTPVVRADLRRPH
RLRMPLAIVAGAAALGAVVGLAVGCAGGGAETAAEAGRPAFTTPNGLARFIADYRAHFGDTSVDEVTLHPEHVSIVRRAA
DNPAQEDRWDYDGEFDHSVTTSRDPDDPTIDLAALDLPAIAAVLAGSTRTVGVPEGAVTHLGIGPSEHAGIAGGLEVQIF
VADERGGRGDLTVAADGAPVAVFPAGR

Sequences:

>Translated_267_residues
MSSAPSGALRAADSDRADVCGMLDAALADGQLTAAEHATRTSAAMRAVTFADLETLIADLQLPEALVDTPVVRADLRRPH
RLRMPLAIVAGAAALGAVVGLAVGCAGGGAETAAEAGRPAFTTPNGLARFIADYRAHFGDTSVDEVTLHPEHVSIVRRAA
DNPAQEDRWDYDGEFDHSVTTSRDPDDPTIDLAALDLPAIAAVLAGSTRTVGVPEGAVTHLGIGPSEHAGIAGGLEVQIF
VADERGGRGDLTVAADGAPVAVFPAGR
>Mature_266_residues
SSAPSGALRAADSDRADVCGMLDAALADGQLTAAEHATRTSAAMRAVTFADLETLIADLQLPEALVDTPVVRADLRRPHR
LRMPLAIVAGAAALGAVVGLAVGCAGGGAETAAEAGRPAFTTPNGLARFIADYRAHFGDTSVDEVTLHPEHVSIVRRAAD
NPAQEDRWDYDGEFDHSVTTSRDPDDPTIDLAALDLPAIAAVLAGSTRTVGVPEGAVTHLGIGPSEHAGIAGGLEVQIFV
ADERGGRGDLTVAADGAPVAVFPAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012551 [H]

Pfam domain/function: PF08044 DUF1707 [H]

EC number: NA

Molecular weight: Translated: 27279; Mature: 27147

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAPSGALRAADSDRADVCGMLDAALADGQLTAAEHATRTSAAMRAVTFADLETLIADL
CCCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLPEALVDTPVVRADLRRPHRLRMPLAIVAGAAALGAVVGLAVGCAGGGAETAAEAGRPA
CCCHHHHCCCHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
FTTPNGLARFIADYRAHFGDTSVDEVTLHPEHVSIVRRAADNPAQEDRWDYDGEFDHSVT
CCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
TSRDPDDPTIDLAALDLPAIAAVLAGSTRTVGVPEGAVTHLGIGPSEHAGIAGGLEVQIF
CCCCCCCCEEEEEHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCCCCCCCCCEEEEE
VADERGGRGDLTVAADGAPVAVFPAGR
EEECCCCCCCEEEEECCCCEEEEECCC
>Mature Secondary Structure 
SSAPSGALRAADSDRADVCGMLDAALADGQLTAAEHATRTSAAMRAVTFADLETLIADL
CCCCCCCEECCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLPEALVDTPVVRADLRRPHRLRMPLAIVAGAAALGAVVGLAVGCAGGGAETAAEAGRPA
CCCHHHHCCCHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCC
FTTPNGLARFIADYRAHFGDTSVDEVTLHPEHVSIVRRAADNPAQEDRWDYDGEFDHSVT
CCCCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
TSRDPDDPTIDLAALDLPAIAAVLAGSTRTVGVPEGAVTHLGIGPSEHAGIAGGLEVQIF
CCCCCCCCEEEEEHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCCCCCCCCCEEEEE
VADERGGRGDLTVAADGAPVAVFPAGR
EEECCCCCCCEEEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]