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The map label for this gene is ytfH [C]

Identifier: 54027411

GI number: 54027411

Start: 5756917

End: 5757327

Strand: Reverse

Name: ytfH [C]

Synonym: nfa54370

Alternate gene names: 54027411

Gene position: 5757327-5756917 (Counterclockwise)

Preceding gene: 54027414

Following gene: 54027410

Centisome position: 95.62

GC content: 73.48

Gene sequence:

>411_bases
ATGCGGCGTGGGAGGCGATTCGGCGCCGAATCGGACATCGGGCCGTGTGCGGGTATCGCCGCCGACCGCCTGGATGCCGT
CCGCCAGGTGCTCGACCGGGTGGGCGACACGTGGAGCCTGCTGGTGCTAGCCGTCCTCGCGGACGGCCCGTTGCGCTACA
GCGACCTGCGGGCCGCCGTGCCCGGCATCTCCCAGCGCATGCTGACCCTCACCCTGCGTCGGCTCGGTGAGCACGGCCTG
GTGACCCGCACCGCTTACCCCGAGGTGCCGCCGCGGGTCGAATACGCTCTCACACCGCTGAGCGGCGGCCTGCTCGACAT
CGTCACCGCGCTGGTCCGGTGGGCCGCCGCCCACCACGACGACATCGTCGGGGACCGCACCGGCGCCGCGGGGAACGGGA
CGCCGACGTAG

Upstream 100 bases:

>100_bases
TCTTTTCCTTCCCACTCGTGTGCGGAGCGCCCAGAATGGGGGATTTCGACGACCCCTACAAAAGGCACATTCGTGTCCGT
GCCGGAGAGGAATGTGCGCT

Downstream 100 bases:

>100_bases
CAGGTATCTCGTCACCCTTACGACCTGGCCGGTGTCGCTTCGCCCGTGTCACCCGGCCGGTATGCCCTGGCCCGTACGAC
ACCGCCCGTATTCGGATCGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRRGRRFGAESDIGPCAGIAADRLDAVRQVLDRVGDTWSLLVLAVLADGPLRYSDLRAAVPGISQRMLTLTLRRLGEHGL
VTRTAYPEVPPRVEYALTPLSGGLLDIVTALVRWAAAHHDDIVGDRTGAAGNGTPT

Sequences:

>Translated_136_residues
MRRGRRFGAESDIGPCAGIAADRLDAVRQVLDRVGDTWSLLVLAVLADGPLRYSDLRAAVPGISQRMLTLTLRRLGEHGL
VTRTAYPEVPPRVEYALTPLSGGLLDIVTALVRWAAAHHDDIVGDRTGAAGNGTPT
>Mature_136_residues
MRRGRRFGAESDIGPCAGIAADRLDAVRQVLDRVGDTWSLLVLAVLADGPLRYSDLRAAVPGISQRMLTLTLRRLGEHGL
VTRTAYPEVPPRVEYALTPLSGGLLDIVTALVRWAAAHHDDIVGDRTGAAGNGTPT

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=99, Percent_Identity=40.4040404040404, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14536; Mature: 14536

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRGRRFGAESDIGPCAGIAADRLDAVRQVLDRVGDTWSLLVLAVLADGPLRYSDLRAAV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHC
PGISQRMLTLTLRRLGEHGLVTRTAYPEVPPRVEYALTPLSGGLLDIVTALVRWAAAHHD
CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
DIVGDRTGAAGNGTPT
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRGRRFGAESDIGPCAGIAADRLDAVRQVLDRVGDTWSLLVLAVLADGPLRYSDLRAAV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHC
PGISQRMLTLTLRRLGEHGLVTRTAYPEVPPRVEYALTPLSGGLLDIVTALVRWAAAHHD
CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
DIVGDRTGAAGNGTPT
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]