| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is iniA [H]
Identifier: 54027385
GI number: 54027385
Start: 5717146
End: 5719056
Strand: Reverse
Name: iniA [H]
Synonym: nfa54110
Alternate gene names: 54027385
Gene position: 5719056-5717146 (Counterclockwise)
Preceding gene: 54027393
Following gene: 54027384
Centisome position: 94.98
GC content: 72.27
Gene sequence:
>1911_bases ATGGTGACACCAGCACAGACTCCGGCCGTACCGCTGCTGTCGGTACTGGGTGAAACCATCGCCGTGGCACGCGCCGCGGG TCGCACCGACCTGGTGGGCCGCCTGGAGGCGGCGGCCGCCCGGGTCCGCGACCCGCGGCGGCGCATCGTGGTGGCGGGCC TGCTCGGCCAGGGCAAGAGTCGTTTGGTCAACGCGCTGATGAACGCCGAGATCTGCCCGGTCGGCGACGACACCACGACC ACTGTCGCGACCGTCCTCGCCCACGGTCCGCAGGCGAAAGCCGAACTGGTGCTGACCGATCCGCGCGGCGGCGGCCCGGA GACGCGGGTGGCGGTTCCGCTCGACCAGCTGGCCGCCGTGGACGAGCGCACGCCGCTCGCCGAGGGCCGCCGCGTGCTGC GGCTGGAGATCGAACTGCCGAATCCCCTGCTCGCCGACGGCATCGTGCTGGTGGACACCCCTGGCGTCGGTGGTCAGGCG AGCGCGGGCGCGGCGACCGTGCTGAGCATGGTGCCCGCCGCGGACGCCGTGCTGGTGGTGTCGGACGCCTCCACCGAGCT GACCGAGCCCGAGCTGGGCTTCCTGCGTCAGGTGCGCGAGCTGTGCCCGACGGTCGCGCTGATGCTCACCAAGACCGACC TGTACCCGCACTGGCGTCAGGTGCACCACGCGGATCTGGGTCATCTGGAGCGGGCCGGGCTGTCGGTGCCGATCCTCCCG GTCTCCGCGCTGCTGCGCGCACATGCCATGCGCACCAAGGACGCCCAGCTCGGCCTGGAATCCGGCTACGGCGAGCTGTT CCGTTTCCTGCGCGAGCAGGTGGTGGCGCGCGATCAGGCCGCGGTCCGCGAGGCGGTGGCCCGCGACATCCACGCCGCCG CCGAACATCTCGCGCTCGCGCTGGGCAGCGAGCTGCTCGCCCTGCGCGATCCCGATCAGGGCGCGACGGCGATCCGGGAA CTCCAGTCGGCCAAGACGGCGGCCGAGGACCTGCACCGCCGCACGGCCGCCTGGCAGCAGACGCTGGCCGACGGCATCAC CGACCTGGCCGGCGACGTCGACCACGATCTGCGGGATCGGCTGCGCGGGATCACCCGGGAAGGGGAGGAGTGGATCGACG ACCACGACCCCGGCAGGCACTGGGACCGCATCGCCGAGTGGCTGACCATGACCGTGGACAGCGCGCTCGGCGACAACCTG CTGTGGACGCACAAGCGGGCGGTGGAGCTGGCCGAGCGGGTGGCCGAGCACTTCTCGCACGTCGGTGCGGTCGAATTGCC GGACGTGCGTGCCGGTTTGGACGGGGAGAGCCGCGCACCGGTCGCCACCCTCGGCGAGCTGGAACCCGACATCGGCCTGG GCAGCAAGCTGCTGGTGGGCATGCGCGGCTCCTACGGTGGCGTGCTGATGGTCGGCCTGGCCAGTACGTTCGCCGGTTTG GCCATGTTCAACCCGCTCTCGCTCGGCGCCGGTGTCCTGGTGGGCGGCAAGGCGTTCCGCGACGACAAGCAGGCGCGCCT GGCCCGCCGCCGCGCCGAGGCCAAGACCGCGATCCGCCGCTTCGTCGACGACGTGGCCTTCCACGCGGGCAAGGAGTCCA AGGACCGCCTGCACCGCATCCACCGGGCGTTGCGCGACCACTACAGCGGGGTCGCCGAACGCAGCCTGCGCTCGATCGAC GACTCGCTGCGCGCCGCCCAGGAGGCCGCCACCATGGCCACCGCCCGGCGCACCGAACGCTGTGAGGTGCTCGAACGGCA ACTGCGCGTGGTCGCCCAGCTGCGCCGCTACGCCGAACAGCTGACCACCGAGCAGAAGACCACCGAGCAGAAGACCACCG AGCAGAAGAACACGAGCACCGCCGGGACAGCGCCCGCCGCCGTGGAGGGCGCCGGTACGGTTGCCGGGTGA
Upstream 100 bases:
>100_bases TCGGGCGCCGAGGCCGCCGGGTCGACCGACCTGACCGGCGACGGATTCCTGAACTGATTTCCCGGCACGAGCAACAGAAT CAGCGAGGTCGACACGCGCG
Downstream 100 bases:
>100_bases GAACCGACACACCGATGGCGCCGGGAATCGTCGGCGAGGCACATCGCCTGATCGGCGCCGCCCGGCAGTCCTTCGCCGAT CAGCCGCGCCCGCGCGCCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
>636_residues MVTPAQTPAVPLLSVLGETIAVARAAGRTDLVGRLEAAAARVRDPRRRIVVAGLLGQGKSRLVNALMNAEICPVGDDTTT TVATVLAHGPQAKAELVLTDPRGGGPETRVAVPLDQLAAVDERTPLAEGRRVLRLEIELPNPLLADGIVLVDTPGVGGQA SAGAATVLSMVPAADAVLVVSDASTELTEPELGFLRQVRELCPTVALMLTKTDLYPHWRQVHHADLGHLERAGLSVPILP VSALLRAHAMRTKDAQLGLESGYGELFRFLREQVVARDQAAVREAVARDIHAAAEHLALALGSELLALRDPDQGATAIRE LQSAKTAAEDLHRRTAAWQQTLADGITDLAGDVDHDLRDRLRGITREGEEWIDDHDPGRHWDRIAEWLTMTVDSALGDNL LWTHKRAVELAERVAEHFSHVGAVELPDVRAGLDGESRAPVATLGELEPDIGLGSKLLVGMRGSYGGVLMVGLASTFAGL AMFNPLSLGAGVLVGGKAFRDDKQARLARRRAEAKTAIRRFVDDVAFHAGKESKDRLHRIHRALRDHYSGVAERSLRSID DSLRAAQEAATMATARRTERCEVLERQLRVVAQLRRYAEQLTTEQKTTEQKTTEQKNTSTAGTAPAAVEGAGTVAG
Sequences:
>Translated_636_residues MVTPAQTPAVPLLSVLGETIAVARAAGRTDLVGRLEAAAARVRDPRRRIVVAGLLGQGKSRLVNALMNAEICPVGDDTTT TVATVLAHGPQAKAELVLTDPRGGGPETRVAVPLDQLAAVDERTPLAEGRRVLRLEIELPNPLLADGIVLVDTPGVGGQA SAGAATVLSMVPAADAVLVVSDASTELTEPELGFLRQVRELCPTVALMLTKTDLYPHWRQVHHADLGHLERAGLSVPILP VSALLRAHAMRTKDAQLGLESGYGELFRFLREQVVARDQAAVREAVARDIHAAAEHLALALGSELLALRDPDQGATAIRE LQSAKTAAEDLHRRTAAWQQTLADGITDLAGDVDHDLRDRLRGITREGEEWIDDHDPGRHWDRIAEWLTMTVDSALGDNL LWTHKRAVELAERVAEHFSHVGAVELPDVRAGLDGESRAPVATLGELEPDIGLGSKLLVGMRGSYGGVLMVGLASTFAGL AMFNPLSLGAGVLVGGKAFRDDKQARLARRRAEAKTAIRRFVDDVAFHAGKESKDRLHRIHRALRDHYSGVAERSLRSID DSLRAAQEAATMATARRTERCEVLERQLRVVAQLRRYAEQLTTEQKTTEQKTTEQKNTSTAGTAPAAVEGAGTVAG >Mature_636_residues MVTPAQTPAVPLLSVLGETIAVARAAGRTDLVGRLEAAAARVRDPRRRIVVAGLLGQGKSRLVNALMNAEICPVGDDTTT TVATVLAHGPQAKAELVLTDPRGGGPETRVAVPLDQLAAVDERTPLAEGRRVLRLEIELPNPLLADGIVLVDTPGVGGQA SAGAATVLSMVPAADAVLVVSDASTELTEPELGFLRQVRELCPTVALMLTKTDLYPHWRQVHHADLGHLERAGLSVPILP VSALLRAHAMRTKDAQLGLESGYGELFRFLREQVVARDQAAVREAVARDIHAAAEHLALALGSELLALRDPDQGATAIRE LQSAKTAAEDLHRRTAAWQQTLADGITDLAGDVDHDLRDRLRGITREGEEWIDDHDPGRHWDRIAEWLTMTVDSALGDNL LWTHKRAVELAERVAEHFSHVGAVELPDVRAGLDGESRAPVATLGELEPDIGLGSKLLVGMRGSYGGVLMVGLASTFAGL AMFNPLSLGAGVLVGGKAFRDDKQARLARRRAEAKTAIRRFVDDVAFHAGKESKDRLHRIHRALRDHYSGVAERSLRSID DSLRAAQEAATMATARRTERCEVLERQLRVVAQLRRYAEQLTTEQKTTEQKTTEQKNTSTAGTAPAAVEGAGTVAG
Specific function: Participates in the development of tolerance to both isoniazid and ethambutol. May function through a MDR-pump like mechanism, although it does not appear to directly transport isoniazid from the cell [H]
COG id: COG0699
COG function: function code R; Predicted GTPases (dynamin-related)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001401 [H]
Pfam domain/function: PF00350 Dynamin_N [H]
EC number: NA
Molecular weight: Translated: 68330; Mature: 68330
Theoretical pI: Translated: 6.48; Mature: 6.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTPAQTPAVPLLSVLGETIAVARAAGRTDLVGRLEAAAARVRDPRRRIVVAGLLGQGKS CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHEEEEEHHCCCHH RLVNALMNAEICPVGDDTTTTVATVLAHGPQAKAELVLTDPRGGGPETRVAVPLDQLAAV HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCHHHHHHH DERTPLAEGRRVLRLEIELPNPLLADGIVLVDTPGVGGQASAGAATVLSMVPAADAVLVV HCCCCHHHCCEEEEEEEECCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEE SDASTELTEPELGFLRQVRELCPTVALMLTKTDLYPHWRQVHHADLGHLERAGLSVPILP ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHH VSALLRAHAMRTKDAQLGLESGYGELFRFLREQVVARDQAAVREAVARDIHAAAEHLALA HHHHHHHHHHCCCHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGSELLALRDPDQGATAIRELQSAKTAAEDLHRRTAAWQQTLADGITDLAGDVDHDLRDR HCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LRGITREGEEWIDDHDPGRHWDRIAEWLTMTVDSALGDNLLWTHKRAVELAERVAEHFSH HHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH VGAVELPDVRAGLDGESRAPVATLGELEPDIGLGSKLLVGMRGSYGGVLMVGLASTFAGL CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHHHH AMFNPLSLGAGVLVGGKAFRDDKQARLARRRAEAKTAIRRFVDDVAFHAGKESKDRLHRI HHCCHHHHCCCEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH HRALRDHYSGVAERSLRSIDDSLRAAQEAATMATARRTERCEVLERQLRVVAQLRRYAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTTEQKTTEQKTTEQKNTSTAGTAPAAVEGAGTVAG HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVTPAQTPAVPLLSVLGETIAVARAAGRTDLVGRLEAAAARVRDPRRRIVVAGLLGQGKS CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHEEEEEHHCCCHH RLVNALMNAEICPVGDDTTTTVATVLAHGPQAKAELVLTDPRGGGPETRVAVPLDQLAAV HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCHHHHHHH DERTPLAEGRRVLRLEIELPNPLLADGIVLVDTPGVGGQASAGAATVLSMVPAADAVLVV HCCCCHHHCCEEEEEEEECCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEE SDASTELTEPELGFLRQVRELCPTVALMLTKTDLYPHWRQVHHADLGHLERAGLSVPILP ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHH VSALLRAHAMRTKDAQLGLESGYGELFRFLREQVVARDQAAVREAVARDIHAAAEHLALA HHHHHHHHHHCCCHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGSELLALRDPDQGATAIRELQSAKTAAEDLHRRTAAWQQTLADGITDLAGDVDHDLRDR HCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH LRGITREGEEWIDDHDPGRHWDRIAEWLTMTVDSALGDNLLWTHKRAVELAERVAEHFSH HHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH VGAVELPDVRAGLDGESRAPVATLGELEPDIGLGSKLLVGMRGSYGGVLMVGLASTFAGL CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHHHH AMFNPLSLGAGVLVGGKAFRDDKQARLARRRAEAKTAIRRFVDDVAFHAGKESKDRLHRI HHCCHHHHCCCEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH HRALRDHYSGVAERSLRSIDDSLRAAQEAATMATARRTERCEVLERQLRVVAQLRRYAEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTTEQKTTEQKTTEQKNTSTAGTAPAAVEGAGTVAG HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]