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The map label for this gene is ybdK [C]

Identifier: 54027271

GI number: 54027271

Start: 5599127

End: 5600269

Strand: Reverse

Name: ybdK [C]

Synonym: nfa52970

Alternate gene names: 54027271

Gene position: 5600269-5599127 (Counterclockwise)

Preceding gene: 54027272

Following gene: 54027270

Centisome position: 93.01

GC content: 68.15

Gene sequence:

>1143_bases
ATGGCCGGGGTAGTCGAGAGCGTTCCGTTCGAGGGTTCGCCCCGGCCCACGATCGGGATCGAATGGGAAGTCGCCCTGGT
CGACAAGGTCACCAGGGATCTGTCCAACACCGCGGCCGCCGTCTTCGACGCCGTCGGTGACCTACGCGCCTGGGACGGCA
CTCCGCAGGTCACCAAGGAGTTGCTGCGCAACACCGTCGAGATCGTCACCGGCGTGCACGAGACGGTCGGCGCGGCGGTG
GAGGATCTGCGCGGCACCATGGACAAGGTGCGCCGCGCGGCCGACCCGCTCGGGGTCGACGTGTTCTGTGCGGGCACCCA
TCCCTTCGCGCAGTGGTCCACCCAGCAGCTCACCCGTTCGCCGCACTACGACGAGCTGATCGAGCGCACCCAGTGGTGGG
GCAGGCAGATGATGATCTGGGGCGTGCACGTGCACGTCGGGGTCTCGCACCGGGAGAAGGTCTTTCCGATCCTGAACTCG
TTGCTGACCACCTTCCCGCACCTGCTGGCGCTGTCGGCCTCCTCGCCGATGTGGGCGGGGTCGGACACCGGGTACGCCAG
CAACCGCACGCTGATGTTCCAGCAGTTGCCCACCGCGGGCCTGCCCTTCCAGTTCGAGAACTGGCGCCAGTTCGAGCACT
TCGTGCACGACGAACTCAAGACCGGGGTGTTCGAGCAGCTCGGCGGCCTGCACTGGGACATCAGGCCCGCACCCAAGTGG
GGCACCATCGAGGTCCGCATCTGCGACGGCATCCCCACCCACGCCGAACTGGCCGCCATCGCGGCGTTCATCCACTGCCT
GATCGTCGATCTCGACCAGCGCATCGAGGACGGCGAACAGCCGATCACGCTGCCGCCCTGGCACGTCCAGGAGAACAAGT
GGCGCGCGGCCCGCTACGGCCTGGACGCCATCGTCATCACCGACGCCGACAGCAACGAGCGGCTGGTCACCGACGACCTG
ATGGACCTGCTCAACCGGCTCGAGCCCACCGCGAAGCGGCTCGGGTGCGCCGACGAACTCGCCTATGTCGCGACCATTCC
CGAGCGGGGCGCGTCCTATCAGCGGCAGCGCAAGGTCGCGGCGGCCTCGCAGGGCGATCTGGTGGCCGTGGTGGACGCCC
TGGTGCACGAACTGGACCGGTAG

Upstream 100 bases:

>100_bases
GGGCGGCGCCGGCCCGGACGACACCACGCTGGCCACCGGCGATGCGGGCAGCCGGGTCGCCTGCGGAGTGGTCCACTAAC
CGAGTAGACGGGGGACGGAG

Downstream 100 bases:

>100_bases
CGCCCCCGTTCGGTCGCCCGCCGTTCAGCCGGTGACACGGGCGGTGTTCATCGTCCGTTTACTATGGTCGGCGTGCTAGT
CGAAAACCCGGGCTCCAGCG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MAGVVESVPFEGSPRPTIGIEWEVALVDKVTRDLSNTAAAVFDAVGDLRAWDGTPQVTKELLRNTVEIVTGVHETVGAAV
EDLRGTMDKVRRAADPLGVDVFCAGTHPFAQWSTQQLTRSPHYDELIERTQWWGRQMMIWGVHVHVGVSHREKVFPILNS
LLTTFPHLLALSASSPMWAGSDTGYASNRTLMFQQLPTAGLPFQFENWRQFEHFVHDELKTGVFEQLGGLHWDIRPAPKW
GTIEVRICDGIPTHAELAAIAAFIHCLIVDLDQRIEDGEQPITLPPWHVQENKWRAARYGLDAIVITDADSNERLVTDDL
MDLLNRLEPTAKRLGCADELAYVATIPERGASYQRQRKVAAASQGDLVAVVDALVHELDR

Sequences:

>Translated_380_residues
MAGVVESVPFEGSPRPTIGIEWEVALVDKVTRDLSNTAAAVFDAVGDLRAWDGTPQVTKELLRNTVEIVTGVHETVGAAV
EDLRGTMDKVRRAADPLGVDVFCAGTHPFAQWSTQQLTRSPHYDELIERTQWWGRQMMIWGVHVHVGVSHREKVFPILNS
LLTTFPHLLALSASSPMWAGSDTGYASNRTLMFQQLPTAGLPFQFENWRQFEHFVHDELKTGVFEQLGGLHWDIRPAPKW
GTIEVRICDGIPTHAELAAIAAFIHCLIVDLDQRIEDGEQPITLPPWHVQENKWRAARYGLDAIVITDADSNERLVTDDL
MDLLNRLEPTAKRLGCADELAYVATIPERGASYQRQRKVAAASQGDLVAVVDALVHELDR
>Mature_379_residues
AGVVESVPFEGSPRPTIGIEWEVALVDKVTRDLSNTAAAVFDAVGDLRAWDGTPQVTKELLRNTVEIVTGVHETVGAAVE
DLRGTMDKVRRAADPLGVDVFCAGTHPFAQWSTQQLTRSPHYDELIERTQWWGRQMMIWGVHVHVGVSHREKVFPILNSL
LTTFPHLLALSASSPMWAGSDTGYASNRTLMFQQLPTAGLPFQFENWRQFEHFVHDELKTGVFEQLGGLHWDIRPAPKWG
TIEVRICDGIPTHAELAAIAAFIHCLIVDLDQRIEDGEQPITLPPWHVQENKWRAARYGLDAIVITDADSNERLVTDDLM
DLLNRLEPTAKRLGCADELAYVATIPERGASYQRQRKVAAASQGDLVAVVDALVHELDR

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=366, Percent_Identity=27.5956284153005, Blast_Score=161, Evalue=6e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL2_NOCFA (Q5YNU2)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_121513.1
- ProteinModelPortal:   Q5YNU2
- SMR:   Q5YNU2
- GeneID:   3110642
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa52970
- NMPDR:   fig|247156.1.peg.5093
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- ProtClustDB:   PRK13517
- BioCyc:   NFAR247156:NFA52970-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 42359; Mature: 42228

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVVESVPFEGSPRPTIGIEWEVALVDKVTRDLSNTAAAVFDAVGDLRAWDGTPQVTKE
CCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LLRNTVEIVTGVHETVGAAVEDLRGTMDKVRRAADPLGVDVFCAGTHPFAQWSTQQLTRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCHHHHHCC
PHYDELIERTQWWGRQMMIWGVHVHVGVSHREKVFPILNSLLTTFPHLLALSASSPMWAG
CCHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SDTGYASNRTLMFQQLPTAGLPFQFENWRQFEHFVHDELKTGVFEQLGGLHWDIRPAPKW
CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
GTIEVRICDGIPTHAELAAIAAFIHCLIVDLDQRIEDGEQPITLPPWHVQENKWRAARYG
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC
LDAIVITDADSNERLVTDDLMDLLNRLEPTAKRLGCADELAYVATIPERGASYQRQRKVA
CEEEEEECCCCCCCEEHHHHHHHHHHCCHHHHHCCCHHHHHEEEECCCCCCHHHHHHHHH
AASQGDLVAVVDALVHELDR
HCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGVVESVPFEGSPRPTIGIEWEVALVDKVTRDLSNTAAAVFDAVGDLRAWDGTPQVTKE
CCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LLRNTVEIVTGVHETVGAAVEDLRGTMDKVRRAADPLGVDVFCAGTHPFAQWSTQQLTRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCHHHHHCC
PHYDELIERTQWWGRQMMIWGVHVHVGVSHREKVFPILNSLLTTFPHLLALSASSPMWAG
CCHHHHHHHHHHCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SDTGYASNRTLMFQQLPTAGLPFQFENWRQFEHFVHDELKTGVFEQLGGLHWDIRPAPKW
CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
GTIEVRICDGIPTHAELAAIAAFIHCLIVDLDQRIEDGEQPITLPPWHVQENKWRAARYG
CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCC
LDAIVITDADSNERLVTDDLMDLLNRLEPTAKRLGCADELAYVATIPERGASYQRQRKVA
CEEEEEECCCCCCCEEHHHHHHHHHHCCHHHHHCCCHHHHHEEEECCCCCCHHHHHHHHH
AASQGDLVAVVDALVHELDR
HCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA