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The map label for this gene is sodC [H]

Identifier: 54027272

GI number: 54027272

Start: 5600291

End: 5600968

Strand: Reverse

Name: sodC [H]

Synonym: nfa52980

Alternate gene names: 54027272

Gene position: 5600968-5600291 (Counterclockwise)

Preceding gene: 54027273

Following gene: 54027271

Centisome position: 93.02

GC content: 73.6

Gene sequence:

>678_bases
ATGGCCCCGTCCACAACTCGTCGCCCGTCCTGGCGGACTGTGACCCCGGTGCTTGCGGTCGCGGTCCTCGGCCTGGCCGC
CTGCTCCAACAGCCAGGAGTCCAGCGACGTCAAGGGCACGACGCCGCCCGTGTGGACCGGCGCCTCCGCGCCCGCCACCA
CCGGCGCGGACCACGGCGAACACGCTTCCGGCACGGGCGCCACCGCCGAGCTGAAGGATGCCTCGGGCGCCTCGGTCGGC
ACCGCGAACATCACGGAGGAGGGCGGCCACCTGGTGATCACCGTCGAGGCCCGCGGCCTGCGGCCCGGCTTCCACGGCCT
GCACTTCCACCAGAACGGCGCCTGCGAGCCGAACTCGGTGGCCCCCACGGGCGGGCCGGCGGGCGACTTCCTCTCCGCGG
GCGGCCACCTGCAGGTCGGCAACGCCAACTCGCATCCGGCCAGCGGCGACCTGACCTCCCTGCAGGTGCGCGGCGACGGC
TCGGCGCGGCTGGTCACCACCACCGACTCGGTGACCCTGAACGACGTGAAGAACCGGGCGCTGATCATCCACTCCGGCCC
GGACAACTTCGGCAACATTCCGGACCGCTACCAGCGCGAGGGCGGCGCCGGCCCGGACGACACCACGCTGGCCACCGGCG
ATGCGGGCAGCCGGGTCGCCTGCGGAGTGGTCCACTAA

Upstream 100 bases:

>100_bases
CAACCGGGCAGCACCGGGCGCGTGGCATCATCGTGACCGGTAACGAACCTGTCCACCCAGCTTTACTCGTAAACTCGGTA
CTCGTAAAGGAGTTCCCCCG

Downstream 100 bases:

>100_bases
CCGAGTAGACGGGGGACGGAGATGGCCGGGGTAGTCGAGAGCGTTCCGTTCGAGGGTTCGCCCCGGCCCACGATCGGGAT
CGAATGGGAAGTCGCCCTGG

Product: putative superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MAPSTTRRPSWRTVTPVLAVAVLGLAACSNSQESSDVKGTTPPVWTGASAPATTGADHGEHASGTGATAELKDASGASVG
TANITEEGGHLVITVEARGLRPGFHGLHFHQNGACEPNSVAPTGGPAGDFLSAGGHLQVGNANSHPASGDLTSLQVRGDG
SARLVTTTDSVTLNDVKNRALIIHSGPDNFGNIPDRYQREGGAGPDDTTLATGDAGSRVACGVVH

Sequences:

>Translated_225_residues
MAPSTTRRPSWRTVTPVLAVAVLGLAACSNSQESSDVKGTTPPVWTGASAPATTGADHGEHASGTGATAELKDASGASVG
TANITEEGGHLVITVEARGLRPGFHGLHFHQNGACEPNSVAPTGGPAGDFLSAGGHLQVGNANSHPASGDLTSLQVRGDG
SARLVTTTDSVTLNDVKNRALIIHSGPDNFGNIPDRYQREGGAGPDDTTLATGDAGSRVACGVVH
>Mature_224_residues
APSTTRRPSWRTVTPVLAVAVLGLAACSNSQESSDVKGTTPPVWTGASAPATTGADHGEHASGTGATAELKDASGASVGT
ANITEEGGHLVITVEARGLRPGFHGLHFHQNGACEPNSVAPTGGPAGDFLSAGGHLQVGNANSHPASGDLTSLQVRGDGS
ARLVTTTDSVTLNDVKNRALIIHSGPDNFGNIPDRYQREGGAGPDDTTLATGDAGSRVACGVVH

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=161, Percent_Identity=34.1614906832298, Blast_Score=74, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71981876, Length=156, Percent_Identity=33.974358974359, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71981879, Length=150, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22571; Mature: 22440

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSTTRRPSWRTVTPVLAVAVLGLAACSNSQESSDVKGTTPPVWTGASAPATTGADHGE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
HASGTGATAELKDASGASVGTANITEEGGHLVITVEARGLRPGFHGLHFHQNGACEPNSV
CCCCCCCEEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCC
APTGGPAGDFLSAGGHLQVGNANSHPASGDLTSLQVRGDGSARLVTTTDSVTLNDVKNRA
CCCCCCCCHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECCCCCE
LIIHSGPDNFGNIPDRYQREGGAGPDDTTLATGDAGSRVACGVVH
EEEECCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCEEEEEECC
>Mature Secondary Structure 
APSTTRRPSWRTVTPVLAVAVLGLAACSNSQESSDVKGTTPPVWTGASAPATTGADHGE
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
HASGTGATAELKDASGASVGTANITEEGGHLVITVEARGLRPGFHGLHFHQNGACEPNSV
CCCCCCCEEEECCCCCCCCCCCEEECCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCC
APTGGPAGDFLSAGGHLQVGNANSHPASGDLTSLQVRGDGSARLVTTTDSVTLNDVKNRA
CCCCCCCCHHHCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECCCCCE
LIIHSGPDNFGNIPDRYQREGGAGPDDTTLATGDAGSRVACGVVH
EEEECCCCCCCCCCHHHHHCCCCCCCCCEEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]