| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is 54026893
Identifier: 54026893
GI number: 54026893
Start: 5137783
End: 5138217
Strand: Reverse
Name: 54026893
Synonym: nfa49190
Alternate gene names: NA
Gene position: 5138217-5137783 (Counterclockwise)
Preceding gene: 54026894
Following gene: 54026892
Centisome position: 85.34
GC content: 66.9
Gene sequence:
>435_bases ATGACCTACACGATCGCGGTCCGCGGCGAGGCGATCTACGGCGGGCTGGTGGTACCGCGGGTGCGGCCGAGCTTCAAGGT CAGCAACAGCGATCTGATCGAATTCCTCAAGGACCGGCTGCGGGACCGGGACGCGGGCGAGGAGCTGATGTACACCGTGT ACGTGCCCGATCCCGCGGGCAACTACAACGCGATGGTGTGCTTCGAGTACGCCGAGCCCGGCCTGGTCCCGGTGGGTGAT CTGCTCGTGCGGGTACCCAAGGGGGTGTACGCGCGGTTCGCGCCCAACGGCGACTATCACGATCCGGTGGAGGATGTGTG GGCCCAGGTCGACGACGCCACCGCGTCCGCCGAGATCACCCGGGCCTACCGGGAGGAGATCGAGGTGTGGCGGGGCCGCG ACCAGGTGGAACTCTACATCTCCATCCTCGTCTGA
Upstream 100 bases:
>100_bases ACGCCGAGGAACACAAGCAGATCAAGCGCACCTACACCGGAGATTTCGAGTGCTATCCGCACGCCTACAAGATCGAGCTG TATCTGGCGGTCGATCCACG
Downstream 100 bases:
>100_bases TTAGCTCAGCGTTAACTGTCGATGAACCGACTGGTCTTCAGGTTCTGTCATGTCCAGCCGATTTAATTGGCTTGACCTGC AGATTTAGTGGGTCGTGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MTYTIAVRGEAIYGGLVVPRVRPSFKVSNSDLIEFLKDRLRDRDAGEELMYTVYVPDPAGNYNAMVCFEYAEPGLVPVGD LLVRVPKGVYARFAPNGDYHDPVEDVWAQVDDATASAEITRAYREEIEVWRGRDQVELYISILV
Sequences:
>Translated_144_residues MTYTIAVRGEAIYGGLVVPRVRPSFKVSNSDLIEFLKDRLRDRDAGEELMYTVYVPDPAGNYNAMVCFEYAEPGLVPVGD LLVRVPKGVYARFAPNGDYHDPVEDVWAQVDDATASAEITRAYREEIEVWRGRDQVELYISILV >Mature_143_residues TYTIAVRGEAIYGGLVVPRVRPSFKVSNSDLIEFLKDRLRDRDAGEELMYTVYVPDPAGNYNAMVCFEYAEPGLVPVGDL LVRVPKGVYARFAPNGDYHDPVEDVWAQVDDATASAEITRAYREEIEVWRGRDQVELYISILV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16264; Mature: 16132
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTIAVRGEAIYGGLVVPRVRPSFKVSNSDLIEFLKDRLRDRDAGEELMYTVYVPDPAG CEEEEEEECCEEECCEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC NYNAMVCFEYAEPGLVPVGDLLVRVPKGVYARFAPNGDYHDPVEDVWAQVDDATASAEIT CCCEEEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHCCCCCHHHHHH RAYREEIEVWRGRDQVELYISILV HHHHHHHHHHCCCCEEEEEEEEEC >Mature Secondary Structure TYTIAVRGEAIYGGLVVPRVRPSFKVSNSDLIEFLKDRLRDRDAGEELMYTVYVPDPAG EEEEEEECCEEECCEEECCCCCCEEECCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCC NYNAMVCFEYAEPGLVPVGDLLVRVPKGVYARFAPNGDYHDPVEDVWAQVDDATASAEIT CCCEEEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHCCCCCHHHHHH RAYREEIEVWRGRDQVELYISILV HHHHHHHHHHCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA