Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is 54026781

Identifier: 54026781

GI number: 54026781

Start: 5021079

End: 5023007

Strand: Reverse

Name: 54026781

Synonym: nfa48070

Alternate gene names: NA

Gene position: 5023007-5021079 (Counterclockwise)

Preceding gene: 54026783

Following gene: 54026780

Centisome position: 83.42

GC content: 74.55

Gene sequence:

>1929_bases
ATGGGCACGGCAGGTTTCGCGGGGGCGGAGAACCCGCACAGTTTCACCCACGCTCGGATCAGGACGGCGGCCGGCCGGCT
ACGGCCCGCGGAGGTGGCGCACGCGGCCGACACCTGGTCCGGGGTGGCAGCGCTGGTCGCCACGGCGGCGGACCGACTCG
CCGGGGTCGCGCGCCGGGTGTTCACGGATCACTGGGAGGGCGCCGCCGCGGCGGCGGCGCGCCGGTGGATGCACGACTAT
CTCGCCCGGCTCGACGCACTGGTCACAGCGGTGGGGGCGCAATCGGAGGCGGTCCGGGCCGCGTCCGAGGCAGCCGCCCG
CTTCCGCGCGGCGATACCCGAGGTCGGTGGTGACAGCGCAGGCGCGCGGGAGCGTCAGCGTGTGGAGGAACAGGCGCGGA
TCGACATGGGGGAGTTGTATGTGCGGGCGTACGCGGAGATCGCGAGGTCGTTTCCGGAACTGCCGATGACCGAGACCGGC
GAGGTTGCCGGGGTAGGCGCGTCTCACGCAGAGGGTGTCGGTGCATTCTTCCCGGGAGGAATCGGGGTTGTTGCGGCCGG
TGAGTTGCCCATCGCGGGCGGTTCGAGCGCCGCCGCTACGGATGGTCCGGGCACCGGTGCGCGCGACGGTGGCGTGGAGG
ATCGTCCGGCCCCGGGGAGAGGTGGGGGTGCGGCATCCCCCGGACTGGTGACAGATCGAGGTGTCTTGTCGGGTGGGGTG
TCGGATCGGGCCGGCTCGCCGGGACGGGTGTGGGGCCTGGATGCGCAATCGGGTGCGGTGTCGGGCCAGGTTGCGCGGCT
GGGTGTGGTGTCGGACGAGGTTGTGCAGTCGGGTGTGGTGTCGGACGGGGTTGCGCGGCCGGGCGTGGTCTCGGACCCGG
TCGCGTCGCCCGACCGGGTGCCGGATCGCGTTCCAACGGGGCAGGAACTGACGGCCTCCGGTTCGGTGCAGGGTGGCGGC
GCCCCGGCGGGAGAGTGGGCCGACGCAACCCGTCCGACCGTGGCGGGCACCCTGGCCCACCACGGCGAGGTCGTCGACGG
GTCACCCTGTCCTGTCCGCCCCGGCGAGGGCGCACTTGTCCTCGATGCCGATCGGGCCGGGGCCGCGCCGGGCGCGGTAG
CGGCGGCGGGCACATCCGCCGCCGCCGTGGCCGGCCTGCCCGCCCTGCCGACTGGTCCCACTGTCCCTGCTGTGCCCGGC
CTGCCCGCTGTGCCCAATGTGCCTTTGGTGCCCGCCCGACCCGCTGTGTCTGCGATGCCAGCCGTGGCCGGCCCACCCGC
TGTGCCTGCGATGCCAGCTGTGCCCGGCCTGCCCGCTGTGCCTGCGATGCCCGCGGTACCCGCCGTGGCCGGCCTGCCCC
CTGTGCTCGGCGTCCCTGCTGTGTCCGCCGTCCCCGCGAGTTCCGGTGACCCCGCGAATTCCGGTGTCCCGCCCACCGCC
CCTGGTGCCACGGATGCGCCATCGGGTGCACCCATGCCGGTTCCTGCCCATCCCACCGACGCGTCCGACGCCCGCCGGCA
GAATGCCACCACCCCGCCCCGCCCTCCGGCCGCCGACCACCCCCTCCACACCGGTGTCCTGACGTTCCCGCCGCCCGCGG
ACCAGTCCCGGGCGGACCGCCGGCTACCCGACTACCTGCGAACCACCGACCACGGGACCGAACTTCTCGGCAAACCGAGA
AAGGTGTTGCCCCCGGCGCTGGGAGCCGACGACGCACCGCCGCCGCCTCGACCCCACCGCCGGACCCCGCCCTGCCCGGC
GCCCCCGACCCGTACCGGCAACGTCGGCCTCACCCTCCCACCGGTCCGCCGCCACCGCTCGCACCCTGCCTCCGGGTCCC
ACCGCAACCGCCACGGAAAGGAACTACTCGGAGACCCGCCGGCCACGGTCCCGCCGGTTATCGGTGAGGACAACGCCGGG
GGCCGGTGA

Upstream 100 bases:

>100_bases
GACGCGGTGTTCCGGCAGGTTCCGCCGCCGGAAAATCCGCGGGAACCGTCGGGCGGCATGTCGCGTCTATATCGATCAAC
TGCGACGCGAGGGGGACGCG

Downstream 100 bases:

>100_bases
TGTGGTGCTCTGTCTGCCGGTGTCACAGGCGCACGGACCGTTCCAGCCCTGTCGCCCGCGCCGACCAGCGAGCGACCATC
GCGGCCATTCGAGGTCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 641

Protein sequence:

>642_residues
MGTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRVFTDHWEGAAAAAARRWMHDY
LARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSAGARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETG
EVAGVGASHAEGVGAFFPGGIGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV
SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRVPDRVPTGQELTASGSVQGGG
APAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALVLDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPG
LPAVPNVPLVPARPAVSAMPAVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA
PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADRRLPDYLRTTDHGTELLGKPR
KVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLPPVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAG
GR

Sequences:

>Translated_642_residues
MGTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRVFTDHWEGAAAAAARRWMHDY
LARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSAGARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETG
EVAGVGASHAEGVGAFFPGGIGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV
SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRVPDRVPTGQELTASGSVQGGG
APAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALVLDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPG
LPAVPNVPLVPARPAVSAMPAVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA
PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADRRLPDYLRTTDHGTELLGKPR
KVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLPPVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAG
GR
>Mature_641_residues
GTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRVFTDHWEGAAAAAARRWMHDYL
ARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSAGARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETGE
VAGVGASHAEGVGAFFPGGIGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGVS
DRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRVPDRVPTGQELTASGSVQGGGA
PAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALVLDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPGL
PAVPNVPLVPARPAVSAMPAVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTAP
GATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADRRLPDYLRTTDHGTELLGKPRK
VLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLPPVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAGG
R

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63610; Mature: 63478

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRV
CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTDHWEGAAAAAARRWMHDYLARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
GARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETGEVAGVGASHAEGVGAFFPGG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHCCCCCCCCCC
IGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV
CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCC
SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRV
CCCCCCCCCEEECCCCCCCCCCCHHEECCHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCC
PDRVPTGQELTASGSVQGGGAPAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALV
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEE
LDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPGLPAVPNVPLVPARPAVSAMP
EECCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
AVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCHHCCCCCCCCCCCCCCCCCC
PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADR
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHH
RLPDYLRTTDHGTELLGKPRKVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLP
HCHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
PVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAGGR
HHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GTAGFAGAENPHSFTHARIRTAAGRLRPAEVAHAADTWSGVAALVATAADRLAGVARRV
CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTDHWEGAAAAAARRWMHDYLARLDALVTAVGAQSEAVRAASEAAARFRAAIPEVGGDSA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
GARERQRVEEQARIDMGELYVRAYAEIARSFPELPMTETGEVAGVGASHAEGVGAFFPGG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHCCCCCCCCCC
IGVVAAGELPIAGGSSAAATDGPGTGARDGGVEDRPAPGRGGGAASPGLVTDRGVLSGGV
CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCC
SDRAGSPGRVWGLDAQSGAVSGQVARLGVVSDEVVQSGVVSDGVARPGVVSDPVASPDRV
CCCCCCCCCEEECCCCCCCCCCCHHEECCHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCC
PDRVPTGQELTASGSVQGGGAPAGEWADATRPTVAGTLAHHGEVVDGSPCPVRPGEGALV
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEECCCCCCCCCCCCEEE
LDADRAGAAPGAVAAAGTSAAAVAGLPALPTGPTVPAVPGLPAVPNVPLVPARPAVSAMP
EECCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
AVAGPPAVPAMPAVPGLPAVPAMPAVPAVAGLPPVLGVPAVSAVPASSGDPANSGVPPTA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHCCCCHHCCCCCCCCCCCCCCCCCC
PGATDAPSGAPMPVPAHPTDASDARRQNATTPPRPPAADHPLHTGVLTFPPPADQSRADR
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHH
RLPDYLRTTDHGTELLGKPRKVLPPALGADDAPPPPRPHRRTPPCPAPPTRTGNVGLTLP
HCHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
PVRRHRSHPASGSHRNRHGKELLGDPPATVPPVIGEDNAGGR
HHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA