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The map label for this gene is p49 [H]

Identifier: 54026602

GI number: 54026602

Start: 4816184

End: 4817647

Strand: Reverse

Name: p49 [H]

Synonym: nfa46290

Alternate gene names: 54026602

Gene position: 4817647-4816184 (Counterclockwise)

Preceding gene: 54026603

Following gene: 54026594

Centisome position: 80.01

GC content: 73.84

Gene sequence:

>1464_bases
ATGGTGGATGTGGCGGTGGTGGGTTCCGGGCCGAACGGTCTCGCGGCGGCGGTGGTTCTCGCGTCGGCGGGGCTGTCGGT
GGAGGTGTTCGAGGCGGCGGCGACCGCGGGCGGCGGATGCAGCACGGCCGAGCTGACACTGCCCGGCTTCCACCACGACG
TCTGCGCCGGAGCCCATCCGATGGCGTCGGCGTCCCCGTTCTTCCGTGCCTTCGACCTCGCCGCGCACGGGGTGGAACTG
TTGGCACCCCCGGCCTCCTACGCCCATCCGCTCGACGGCGGCCGGGCCGGCGTCGCCTGGCGCGACCTCGACCGCACCGT
CGCCGACCTCGGGCCCGACGGTCCCGCCTGGCGCTCGTTCTTCGAGCCGCTGGTGCGCGACTGGCCGGGCGTGGTCGGCG
TGGCCATGTCCGACCTGCGGCATCTGCCGCCGGACCCGCCGACCGCGGTCCGGTTCGGCCTGCGCCTGCTGGAACAGGGC
TCGCCGCTGTGGAATCTGCGTTTCCGTGGCGACGTCGCGCCCGCGCTGCTCACCGGCGTCGCCACCCACGCGATCACCTC
ACCGCGCGCGCTACCCGCCGTCGGCGCGGGCGTCCTGCTGGGCACCCTGGCGCACGCGGCGGGCTGGGTGATCCCGCGCG
GCGGCAGCCAGGCCATCGCCGACGCCCTCATCACCGAACTCGAACGCCTCGGCGGCAGCGTGCACACCGGTCACCGGGTG
GACTCCCTCGACGAGTTCGGCGGCGCCCGCGCGATCGTGCTCGACACCTCGCCCGCCGAACTGCTGAGACTCGCGCAGGA
CCGGCTACCCGCCGGATATGCCAGGCGGCTGCGCCGATTCCGTTACGGCGGCGCCGCCTGCAAGGTCGACTTCGCGTTGT
CGGGCCCGGTGCCGTGGGCTGCCCCGGACTGCGCCCATGCAGGCACCCTGCACCTGGTCGGCAGCCGGGCCGAGGCGATG
GCCGCCGAGGGCGCGGTCGCCTCGGGCAGGCACGCCGAACGCCCCTACGTGCTGGCCATCCAGCCCGGCGTGGTCGACGA
TTCCCGCGCTCCCGCGGGCAGATACACCTTCTACACCTACGCGCACGTACCGCACGGCTCGGACCTCGACGTCACCGACG
CGGTGATCGCCCAGGTCGAGCGGTTCGCCCCCGGCTTCCGCGACCTGATCCTCGCGCACAACACCCGCACCGCCGCCGAA
CTGCCCACCCACAACGCCAACTACGTCGGCGGCGACATCTCCGCGGGCGCGATGATCCTCCCGCAGGTCCTGTTCCGCCC
CGCCCCCCGGTGGAATCCCTACGCCACACCGCTGCCCGGCGTCTACCTCTGCTCCTCCGCCACCCCGCCCGGTCCAGGCG
TGCACGGCATGAACGGCCTCAACGCCGCCCGGCACGTCCTGCGCCGCGAGTTCGACATCACCACCGACCCACTGGAACTC
CTCGGCACCGCGGTGCGCACCTGA

Upstream 100 bases:

>100_bases
CACCCGCGGTGGCCGCGACGCGAGCACGCGAGGGCCGCGTGAGCGAGGCGATCCCGGCGCGTCGTGGCCGGGACGTGCCC
GGCCGCCTACCGTGGGTGGC

Downstream 100 bases:

>100_bases
GCGCGCCGCCTTCGGCCGCTGACCCGCTCAGGCGGTACTGAACTCGCCCGCCGCTGACCCGCTCAGGCGACGGGCGTGCG
GTAGAGGTCGGGCTCGAGGT

Product: putative dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MVDVAVVGSGPNGLAAAVVLASAGLSVEVFEAAATAGGGCSTAELTLPGFHHDVCAGAHPMASASPFFRAFDLAAHGVEL
LAPPASYAHPLDGGRAGVAWRDLDRTVADLGPDGPAWRSFFEPLVRDWPGVVGVAMSDLRHLPPDPPTAVRFGLRLLEQG
SPLWNLRFRGDVAPALLTGVATHAITSPRALPAVGAGVLLGTLAHAAGWVIPRGGSQAIADALITELERLGGSVHTGHRV
DSLDEFGGARAIVLDTSPAELLRLAQDRLPAGYARRLRRFRYGGAACKVDFALSGPVPWAAPDCAHAGTLHLVGSRAEAM
AAEGAVASGRHAERPYVLAIQPGVVDDSRAPAGRYTFYTYAHVPHGSDLDVTDAVIAQVERFAPGFRDLILAHNTRTAAE
LPTHNANYVGGDISAGAMILPQVLFRPAPRWNPYATPLPGVYLCSSATPPGPGVHGMNGLNAARHVLRREFDITTDPLEL
LGTAVRT

Sequences:

>Translated_487_residues
MVDVAVVGSGPNGLAAAVVLASAGLSVEVFEAAATAGGGCSTAELTLPGFHHDVCAGAHPMASASPFFRAFDLAAHGVEL
LAPPASYAHPLDGGRAGVAWRDLDRTVADLGPDGPAWRSFFEPLVRDWPGVVGVAMSDLRHLPPDPPTAVRFGLRLLEQG
SPLWNLRFRGDVAPALLTGVATHAITSPRALPAVGAGVLLGTLAHAAGWVIPRGGSQAIADALITELERLGGSVHTGHRV
DSLDEFGGARAIVLDTSPAELLRLAQDRLPAGYARRLRRFRYGGAACKVDFALSGPVPWAAPDCAHAGTLHLVGSRAEAM
AAEGAVASGRHAERPYVLAIQPGVVDDSRAPAGRYTFYTYAHVPHGSDLDVTDAVIAQVERFAPGFRDLILAHNTRTAAE
LPTHNANYVGGDISAGAMILPQVLFRPAPRWNPYATPLPGVYLCSSATPPGPGVHGMNGLNAARHVLRREFDITTDPLEL
LGTAVRT
>Mature_487_residues
MVDVAVVGSGPNGLAAAVVLASAGLSVEVFEAAATAGGGCSTAELTLPGFHHDVCAGAHPMASASPFFRAFDLAAHGVEL
LAPPASYAHPLDGGRAGVAWRDLDRTVADLGPDGPAWRSFFEPLVRDWPGVVGVAMSDLRHLPPDPPTAVRFGLRLLEQG
SPLWNLRFRGDVAPALLTGVATHAITSPRALPAVGAGVLLGTLAHAAGWVIPRGGSQAIADALITELERLGGSVHTGHRV
DSLDEFGGARAIVLDTSPAELLRLAQDRLPAGYARRLRRFRYGGAACKVDFALSGPVPWAAPDCAHAGTLHLVGSRAEAM
AAEGAVASGRHAERPYVLAIQPGVVDDSRAPAGRYTFYTYAHVPHGSDLDVTDAVIAQVERFAPGFRDLILAHNTRTAAE
LPTHNANYVGGDISAGAMILPQVLFRPAPRWNPYATPLPGVYLCSSATPPGPGVHGMNGLNAARHVLRREFDITTDPLEL
LGTAVRT

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=551, Percent_Identity=26.6787658802178, Blast_Score=90, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17540238, Length=535, Percent_Identity=22.9906542056075, Blast_Score=96, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50814; Mature: 50814

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDVAVVGSGPNGLAAAVVLASAGLSVEVFEAAATAGGGCSTAELTLPGFHHDVCAGAHP
CEEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHCCCCCCCEEEEECCCCCHHHHCCCCC
MASASPFFRAFDLAAHGVELLAPPASYAHPLDGGRAGVAWRDLDRTVADLGPDGPAWRSF
CCCCCHHHHHHHHHHCCHHEECCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
FEPLVRDWPGVVGVAMSDLRHLPPDPPTAVRFGLRLLEQGSPLWNLRFRGDVAPALLTGV
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
ATHAITSPRALPAVGAGVLLGTLAHAAGWVIPRGGSQAIADALITELERLGGSVHTGHRV
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
DSLDEFGGARAIVLDTSPAELLRLAQDRLPAGYARRLRRFRYGGAACKVDFALSGPVPWA
CCHHHHCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
APDCAHAGTLHLVGSRAEAMAAEGAVASGRHAERPYVLAIQPGVVDDSRAPAGRYTFYTY
CCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEE
AHVPHGSDLDVTDAVIAQVERFAPGFRDLILAHNTRTAAELPTHNANYVGGDISAGAMIL
EECCCCCCCCHHHHHHHHHHHHCCCHHHHEEECCCCCHHHCCCCCCCCCCCCCCCCHHHH
PQVLFRPAPRWNPYATPLPGVYLCSSATPPGPGVHGMNGLNAARHVLRREFDITTDPLEL
HHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
LGTAVRT
HHHHHCC
>Mature Secondary Structure
MVDVAVVGSGPNGLAAAVVLASAGLSVEVFEAAATAGGGCSTAELTLPGFHHDVCAGAHP
CEEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHCCCCCCCEEEEECCCCCHHHHCCCCC
MASASPFFRAFDLAAHGVELLAPPASYAHPLDGGRAGVAWRDLDRTVADLGPDGPAWRSF
CCCCCHHHHHHHHHHCCHHEECCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHH
FEPLVRDWPGVVGVAMSDLRHLPPDPPTAVRFGLRLLEQGSPLWNLRFRGDVAPALLTGV
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH
ATHAITSPRALPAVGAGVLLGTLAHAAGWVIPRGGSQAIADALITELERLGGSVHTGHRV
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
DSLDEFGGARAIVLDTSPAELLRLAQDRLPAGYARRLRRFRYGGAACKVDFALSGPVPWA
CCHHHHCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
APDCAHAGTLHLVGSRAEAMAAEGAVASGRHAERPYVLAIQPGVVDDSRAPAGRYTFYTY
CCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEE
AHVPHGSDLDVTDAVIAQVERFAPGFRDLILAHNTRTAAELPTHNANYVGGDISAGAMIL
EECCCCCCCCHHHHHHHHHHHHCCCHHHHEEECCCCCHHHCCCCCCCCCCCCCCCCHHHH
PQVLFRPAPRWNPYATPLPGVYLCSSATPPGPGVHGMNGLNAARHVLRREFDITTDPLEL
HHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
LGTAVRT
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]