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The map label for this gene is alkB [H]

Identifier: 54026591

GI number: 54026591

Start: 4804963

End: 4806204

Strand: Reverse

Name: alkB [H]

Synonym: nfa46180

Alternate gene names: 54026591

Gene position: 4806204-4804963 (Counterclockwise)

Preceding gene: 54026592

Following gene: 54026590

Centisome position: 79.82

GC content: 67.79

Gene sequence:

>1242_bases
ATGTCGACGAATACGGACGCGGCGGGGCGGTCGGTGCAGGTGCCCGCCTGGCGGGACCGCAAGCGCTATCTGTGGCTGTG
GGGGCTGTTCGCGCCGACCGGGCTGTTCACGATCGGGCTGCCGCTGATCTGGGCGCTCAACGAGATCGGCTGGCACGGGG
CGGCGCATGTGCCGTTCTGGCTCGGGCCGATCCTGGTCTACCTGATCATTCCGGTGGCCGACATCTTCTTCGGGCCCGAC
GGCGACAACCCGCCCGACGAGGTGATGGAGTACCTGGAGAACGACAAGTACTACCGCTATCTCACCTACCTGTACCTGCC
GTTCCAGTACGCGGGATTGATCACGGCCTGCTACCTGATCACCGCGGGCGACCTGAGCTGGCTCGGCATCGATGGCGGGC
TGCACGTGGCCGACAAGATCGGACTGGCGATCACCGTGGGCATGATCGGCGGGATCGGCATCAACACCGCGCACGAACTC
GGCCACAAGAAGGTCGATCTGGAGCGCTGGCTGTCGAGAATCGCGCTGGCCCAATCGTTCTACGGGCACTTCTACATCGA
GCACAACCGCGGTCACCACGTGCGCGTCGCGACGCCGGAGGATCCGGCGAGTTCCCGGGTGGGCGAGACGTTCTGGGAGT
TCTGGCCGCGCACGGTGTGGGGCAGCCTGAAGTCGGCGTGGCGGCTGGAGCGGACCCGGCTCGAGCGGCTGGGCTCCGGG
CCGTGGACGTTGCGCAACGAGGTGCTCTCCGCCTGGCTGATGTCGGCGGTGCTGTACGCGGCCCTGCTGGCGGTGTTCGG
TCTGGAGCTGCTGCCGTATCTGATCCTGCAGGCGGTGGTCGGCTTCAGCCTGCTGGAGGCGGTCAACTACCTCGAGCACT
ACGGTCTGCTGCGCCAGCGCACCGCCTCGGGCCGCTACGAGCGCCCGGCACCGGTGCACAGCTGGAACAGCGACCACCTG
GTCACCAACATCTTCCTGTACCACCTGCAGCGCCACAGCGATCATCACGCCTACCCGACGAGGCGGTACCAGACCCTGCG
CAGCTGGGAGGGCGCGCCGAACCTGCCGAGCGGCTACGCCAGCATGATCATGCTCGCCTACGTGCCGCCGCTGTGGCGCA
AGGTGATGGACAAGCGGGTGCTCGCGCACTACGACGGCGACATCACCCGCGCCAGCATCCACCCGCGCAAGCGTGCCGCG
GTGCTGGCCCGCTACGGCGCACCGGACGGGGCGCGGTCATGA

Upstream 100 bases:

>100_bases
AGCTTTACAAATCGGCTGATTTGTCTAGACAGGCGACAACGCTGGCCCTATTGTCCAATCAAAGGTGTTGCATGCGTCAC
ACTGATGGGAGACGACGACG

Downstream 100 bases:

>100_bases
GCGCCTACCGCTGCCCGGTGTGCGACTACGTCTACGACGAGACGAACGGTGAACCGCACGAAGGCTTTCCGGCCGGCACG
CCGTGGTCGGCGGTGCCGGA

Product: putative alkane-1-monooxygenase

Products: NA

Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase [H]

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSTNTDAAGRSVQVPAWRDRKRYLWLWGLFAPTGLFTIGLPLIWALNEIGWHGAAHVPFWLGPILVYLIIPVADIFFGPD
GDNPPDEVMEYLENDKYYRYLTYLYLPFQYAGLITACYLITAGDLSWLGIDGGLHVADKIGLAITVGMIGGIGINTAHEL
GHKKVDLERWLSRIALAQSFYGHFYIEHNRGHHVRVATPEDPASSRVGETFWEFWPRTVWGSLKSAWRLERTRLERLGSG
PWTLRNEVLSAWLMSAVLYAALLAVFGLELLPYLILQAVVGFSLLEAVNYLEHYGLLRQRTASGRYERPAPVHSWNSDHL
VTNIFLYHLQRHSDHHAYPTRRYQTLRSWEGAPNLPSGYASMIMLAYVPPLWRKVMDKRVLAHYDGDITRASIHPRKRAA
VLARYGAPDGARS

Sequences:

>Translated_413_residues
MSTNTDAAGRSVQVPAWRDRKRYLWLWGLFAPTGLFTIGLPLIWALNEIGWHGAAHVPFWLGPILVYLIIPVADIFFGPD
GDNPPDEVMEYLENDKYYRYLTYLYLPFQYAGLITACYLITAGDLSWLGIDGGLHVADKIGLAITVGMIGGIGINTAHEL
GHKKVDLERWLSRIALAQSFYGHFYIEHNRGHHVRVATPEDPASSRVGETFWEFWPRTVWGSLKSAWRLERTRLERLGSG
PWTLRNEVLSAWLMSAVLYAALLAVFGLELLPYLILQAVVGFSLLEAVNYLEHYGLLRQRTASGRYERPAPVHSWNSDHL
VTNIFLYHLQRHSDHHAYPTRRYQTLRSWEGAPNLPSGYASMIMLAYVPPLWRKVMDKRVLAHYDGDITRASIHPRKRAA
VLARYGAPDGARS
>Mature_412_residues
STNTDAAGRSVQVPAWRDRKRYLWLWGLFAPTGLFTIGLPLIWALNEIGWHGAAHVPFWLGPILVYLIIPVADIFFGPDG
DNPPDEVMEYLENDKYYRYLTYLYLPFQYAGLITACYLITAGDLSWLGIDGGLHVADKIGLAITVGMIGGIGINTAHELG
HKKVDLERWLSRIALAQSFYGHFYIEHNRGHHVRVATPEDPASSRVGETFWEFWPRTVWGSLKSAWRLERTRLERLGSGP
WTLRNEVLSAWLMSAVLYAALLAVFGLELLPYLILQAVVGFSLLEAVNYLEHYGLLRQRTASGRYERPAPVHSWNSDHLV
TNIFLYHLQRHSDHHAYPTRRYQTLRSWEGAPNLPSGYASMIMLAYVPPLWRKVMDKRVLAHYDGDITRASIHPRKRAAV
LARYGAPDGARS

Specific function: Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases long-chain-length alkanes with at least 12 carbon atoms [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.15.3 [H]

Molecular weight: Translated: 46948; Mature: 46817

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNTDAAGRSVQVPAWRDRKRYLWLWGLFAPTGLFTIGLPLIWALNEIGWHGAAHVPFW
CCCCCCCCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LGPILVYLIIPVADIFFGPDGDNPPDEVMEYLENDKYYRYLTYLYLPFQYAGLITACYLI
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
TAGDLSWLGIDGGLHVADKIGLAITVGMIGGIGINTAHELGHKKVDLERWLSRIALAQSF
CCCCEEEEECCCCCCHHHHHCCEEEEEHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
YGHFYIEHNRGHHVRVATPEDPASSRVGETFWEFWPRTVWGSLKSAWRLERTRLERLGSG
HCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PWTLRNEVLSAWLMSAVLYAALLAVFGLELLPYLILQAVVGFSLLEAVNYLEHYGLLRQR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TASGRYERPAPVHSWNSDHLVTNIFLYHLQRHSDHHAYPTRRYQTLRSWEGAPNLPSGYA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHH
SMIMLAYVPPLWRKVMDKRVLAHYDGDITRASIHPRKRAAVLARYGAPDGARS
HHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
STNTDAAGRSVQVPAWRDRKRYLWLWGLFAPTGLFTIGLPLIWALNEIGWHGAAHVPFW
CCCCCCCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
LGPILVYLIIPVADIFFGPDGDNPPDEVMEYLENDKYYRYLTYLYLPFQYAGLITACYLI
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
TAGDLSWLGIDGGLHVADKIGLAITVGMIGGIGINTAHELGHKKVDLERWLSRIALAQSF
CCCCEEEEECCCCCCHHHHHCCEEEEEHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
YGHFYIEHNRGHHVRVATPEDPASSRVGETFWEFWPRTVWGSLKSAWRLERTRLERLGSG
HCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PWTLRNEVLSAWLMSAVLYAALLAVFGLELLPYLILQAVVGFSLLEAVNYLEHYGLLRQR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TASGRYERPAPVHSWNSDHLVTNIFLYHLQRHSDHHAYPTRRYQTLRSWEGAPNLPSGYA
HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHH
SMIMLAYVPPLWRKVMDKRVLAHYDGDITRASIHPRKRAAVLARYGAPDGARS
HHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]