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The map label for this gene is 54026580

Identifier: 54026580

GI number: 54026580

Start: 4794246

End: 4794950

Strand: Reverse

Name: 54026580

Synonym: nfa46070

Alternate gene names: NA

Gene position: 4794950-4794246 (Counterclockwise)

Preceding gene: 54026581

Following gene: 54026579

Centisome position: 79.63

GC content: 67.38

Gene sequence:

>705_bases
GTGACGACTTCTTCACGACCTTCAGTGACAGATCCTTCGGTGCCCGAGGAGGCCGCGGAGCGGCCACGGGCCACCCGCGC
CGAGGTTGTGGTGAAAGGCCGCAATGTCGAGGTACCCGACCATTTCCGAATTCACGTGGCCGACAAGTTGTCTCGGCTCG
AGCGGTTCGATCCGACGATCTTCATCTTCGACGTCGAACTCTTCCACGAACGCAACCGCCGCCAGCGTAAGGCGTGCCAG
CGGGTGGAGATCACCGCTCGGGGCAAGGGCCCGGTCGTACGCGCCGAGGCGTGCGCGGACAATTTCTACGCCGCACTCGA
GTCGGTGACGGCCAAGGTGGAGAGCCGGTTGCGCCGCACCAAGGACCGCCGCCGCGTGCACTACGGGGAGAAGACCCCGG
TCTCGGTCGCCGAGGCCACCGCGGACCTCGTCGACGAGACGCTGTTCGCGCGCAACGGCTCCGAGCCGGCGCACCGGCAC
GACGAGGAGCGGGAGTTCGAGCCCGCCGAGCCCGAGTACCAGGGCCCCGGCCACATCGTGCGCACCAAGGTCCACTCGGC
GACCCCGATGACCGTCGACGACGCCCTCTACCAGATGGAGCTCGTCGGGCACGATTTCTTCCTCTTCCACGACAAGGAGA
CCGACCGGCCGTCCGTCGTCTACCGGCGGCACGCCTTCGACTACGGCCTGATCCGACTCGCCTAG

Upstream 100 bases:

>100_bases
GCACCTCGGGTGCCCGTGTTCGCCGGAATCGGTTCAGCTCGGCACGGCTCAACCCCGCCGCACGCGAAAAGGTCTGTGCG
GCCAGATCCGGGAGGTACGC

Downstream 100 bases:

>100_bases
TCGCCCGGTCTCTAGCCCCTCCGGCCCGTTCGCCACCCGGCGGCGGGCCGGTCGCATGTCCGGGTTCCGGGCAAACCCTG
GCCGCGCTTCTTACTTCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MTTSSRPSVTDPSVPEEAAERPRATRAEVVVKGRNVEVPDHFRIHVADKLSRLERFDPTIFIFDVELFHERNRRQRKACQ
RVEITARGKGPVVRAEACADNFYAALESVTAKVESRLRRTKDRRRVHYGEKTPVSVAEATADLVDETLFARNGSEPAHRH
DEEREFEPAEPEYQGPGHIVRTKVHSATPMTVDDALYQMELVGHDFFLFHDKETDRPSVVYRRHAFDYGLIRLA

Sequences:

>Translated_234_residues
MTTSSRPSVTDPSVPEEAAERPRATRAEVVVKGRNVEVPDHFRIHVADKLSRLERFDPTIFIFDVELFHERNRRQRKACQ
RVEITARGKGPVVRAEACADNFYAALESVTAKVESRLRRTKDRRRVHYGEKTPVSVAEATADLVDETLFARNGSEPAHRH
DEEREFEPAEPEYQGPGHIVRTKVHSATPMTVDDALYQMELVGHDFFLFHDKETDRPSVVYRRHAFDYGLIRLA
>Mature_233_residues
TTSSRPSVTDPSVPEEAAERPRATRAEVVVKGRNVEVPDHFRIHVADKLSRLERFDPTIFIFDVELFHERNRRQRKACQR
VEITARGKGPVVRAEACADNFYAALESVTAKVESRLRRTKDRRRVHYGEKTPVSVAEATADLVDETLFARNGSEPAHRHD
EEREFEPAEPEYQGPGHIVRTKVHSATPMTVDDALYQMELVGHDFFLFHDKETDRPSVVYRRHAFDYGLIRLA

Specific function: Unknown

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 26862; Mature: 26731

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSSRPSVTDPSVPEEAAERPRATRAEVVVKGRNVEVPDHFRIHVADKLSRLERFDPTI
CCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCEE
FIFDVELFHERNRRQRKACQRVEITARGKGPVVRAEACADNFYAALESVTAKVESRLRRT
EEEEHHHHHHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
KDRRRVHYGEKTPVSVAEATADLVDETLFARNGSEPAHRHDEEREFEPAEPEYQGPGHIV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCEE
RTKVHSATPMTVDDALYQMELVGHDFFLFHDKETDRPSVVYRRHAFDYGLIRLA
EEEECCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHEEHHHCCCCCEEEEC
>Mature Secondary Structure 
TTSSRPSVTDPSVPEEAAERPRATRAEVVVKGRNVEVPDHFRIHVADKLSRLERFDPTI
CCCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCEE
FIFDVELFHERNRRQRKACQRVEITARGKGPVVRAEACADNFYAALESVTAKVESRLRRT
EEEEHHHHHHHHHHHHHHHHHEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
KDRRRVHYGEKTPVSVAEATADLVDETLFARNGSEPAHRHDEEREFEPAEPEYQGPGHIV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCCCCEE
RTKVHSATPMTVDDALYQMELVGHDFFLFHDKETDRPSVVYRRHAFDYGLIRLA
EEEECCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHEEHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA