| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026496
Identifier: 54026496
GI number: 54026496
Start: 4691576
End: 4693378
Strand: Reverse
Name: 54026496
Synonym: nfa45230
Alternate gene names: NA
Gene position: 4693378-4691576 (Counterclockwise)
Preceding gene: 54026497
Following gene: 54026492
Centisome position: 77.95
GC content: 66.72
Gene sequence:
>1803_bases TTGTGGGGTAGCCGAATCAGTCATTCGATCGGGACGCTCGCCCTGGTGGTGAGTTGCGTGGCGTTCGGCGGCGATGAACA CGCCGCGGCGATCGACCATACGTACGCTGCTGCCTCGTCCTCGGAACTGTTGGTGGTCCGTGGTGCCGAGATCGTCGCGC GGGCGTCGATCAGCCCGCTGCCCTGGGGCGGTAAGACCGTGATGACCAACGACCGCCGCCACTACGCCCGGCTGTCGGCT GTACCCGGCACGGCGGAACAGGACGAAGACGGTCAGGTGGAGTTGATCACCGTATCGGTGGCCGACGGGCGTGTGGTGCG GCGTGAGTGCCCCGGATGCACCTCTGCCGCCGCCATCGGCCCCACCGAGGTGGTGGTGACCTCCACCCTCGGGGGCGGGC TCTTCGACACCGTCGGTGCGCTGCTGGTCTTCGATGCCGCGACCGAGGACGCGCCGAGTCGACTGACTCCTCGTCCACCG GGAGTGAACCGCGTACAGCAGGCCACAGAGTTCGTGGCAGCCATGGGCCTTGTGGCCGGCTCGGACGAGGCCGCGTTCGC CATCGGCTACGACCAGGCGGCGACGATGGCCGGGATGTACCGGCTCGACCGCTTCGGCGGTGTGCGCTTCGAGGGGTTGC GACGGTACTACGGCTTTCGTGACGAAGACGGCAGGCGCTGGGGCCTGGTCGATACCACGGCCGCTCCGGTCGTACTCGCG GAATCCCCGGTGATGGGCATGGCGTTCGCCTCGACCTACGAAGCCGACGAACCCGCGAGAGAGGATGAACCGCCGACCGA CAATGTCGGCTGCACACGGCACACCCTCATCGACATCGTGGATGGAACCGGCGACGTGCGAACTCTGCGAATCGACGATG CAGTTCGCGCCGCGGGGATGGACCCGTCGTCGGTGGGGACGGTGATCAGCAGGCTCTGGCAGAGCCCGGACGGCATTTTG CGCGGTGTCGTGCGGGTCCGCGGTTGTGATCCGAAGGCCGATGCCCCTAGCTATTGGGACCTCGTGGTCGACGGTCGAGG CGTGCGTCTGTTGGGGCAGCGACAGCCAGTCTCGCGATTCGGCTCGGGCGCGGCTGCGGTGACCGTGTCGGAGGGATTCG TCCAGGGGGAGCGGCCCTTCGCGGTACGCACCGGTGACGAAGCCGAGTGGGGTGAGTTCCTGGAAATCACAGGAACCGCG ATGGGGCTCCGGGAGACATCGCCGTTGAACCGGGCCTTGCCACTACCCGAGACCGTGGGCGACCGCACTCGCCTGTCGAC CGTTCGTCCTGTCGACAACACTCGAAAACTGCGGGCGGAGTACGACGTTCAGCGCAGGATCGACGGCGCGTGCCGAGATT CCCGGCACAGGGTGGCGCGCGTACTGCTGGAGTGCACGACCGCGGAGGGCACCCACGAGCTGTGCTGGGCGGGACAGCCC TCGAACACCGCGTACTGTCTCGATGACGTGACCGGCAGGTCGGTCGTCGAGGTTCGCTCGCGCTCCGGTAGAGGTGTCGG TGTCGTCGGCGCGTCCGACGTGGTCGGGGACGGTGTGGTACGGATTCCGCTGGCGCTTCGGCTGATCGATGGCCGAACCT GTGCACTCGACAGCCACGTACCACCCGACGCGCACGACCACACCTACACGTGCATAGATGGTTCACAGGTGCTCGACAAT CAGAACTCCGGTCCCACCGCATTCGTCGCCGACGGCACTCTGTTCACGGCCTCCCATCGTGCGCTCGACGGCACCCTGAC CGACATCCCGATCACCGAACTGTTTCTGGTCCAATCGAATTGA
Upstream 100 bases:
>100_bases GTCGAACTTGTGACCGAACCGTTCCGTCCGGTGGAGCGGGTCCCACCATTCGTGCGCGAGGATCCAGCGGCCTTGGCCGC CGAATGTCCAGGGAGCTGAG
Downstream 100 bases:
>100_bases GAGTGGGCAAAGCGAACGGCGCCGTCGTCCCTCGGGACGGCGGCGCCGTTGTCGTCGGTGCGACCGATGCGTCAGCGACC CAGCGAGTCGATGAGCACGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 600; Mature: 600
Protein sequence:
>600_residues MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPLPWGGKTVMTNDRRHYARLSA VPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIGPTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPP GVNRVQQATEFVAAMGLVAGSDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGMDPSSVGTVISRLWQSPDGIL RGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRFGSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTA MGLRETSPLNRALPLPETVGDRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHVPPDAHDHTYTCIDGSQVLDN QNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN
Sequences:
>Translated_600_residues MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPLPWGGKTVMTNDRRHYARLSA VPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIGPTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPP GVNRVQQATEFVAAMGLVAGSDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGMDPSSVGTVISRLWQSPDGIL RGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRFGSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTA MGLRETSPLNRALPLPETVGDRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHVPPDAHDHTYTCIDGSQVLDN QNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN >Mature_600_residues MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPLPWGGKTVMTNDRRHYARLSA VPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIGPTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPP GVNRVQQATEFVAAMGLVAGSDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGMDPSSVGTVISRLWQSPDGIL RGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRFGSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTA MGLRETSPLNRALPLPETVGDRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHVPPDAHDHTYTCIDGSQVLDN QNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63891; Mature: 63891
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPL CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCEEEEECCCCCC PWGGKTVMTNDRRHYARLSAVPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIG CCCCEEEEECCCHHHEEEECCCCCCCCCCCCCEEEEEEEECCCEEEHHCCCCCCCCCCCC PTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPPGVNRVQQATEFVAAMGLVAG CCEEEEEECCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEC SDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA CCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEECEEECCCCCEEEE ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGM CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHHCCC DPSSVGTVISRLWQSPDGILRGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRF CHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCCEEEECCCCCHHHH GSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTAMGLRETSPLNRALPLPETVG CCCEEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCHHCC DRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP CCHHCCEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHV CCCEEEEECCCCCEEEEHHHCCCCEEEEEECCHHCCCCEEEEEEEEEEECCCEEEECCCC PPDAHDHTYTCIDGSQVLDNQNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN CCCCCCCEEEEECCHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MWGSRISHSIGTLALVVSCVAFGGDEHAAAIDHTYAAASSSELLVVRGAEIVARASISPL CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEECCEEEEECCCCCC PWGGKTVMTNDRRHYARLSAVPGTAEQDEDGQVELITVSVADGRVVRRECPGCTSAAAIG CCCCEEEEECCCHHHEEEECCCCCCCCCCCCCEEEEEEEECCCEEEHHCCCCCCCCCCCC PTEVVVTSTLGGGLFDTVGALLVFDAATEDAPSRLTPRPPGVNRVQQATEFVAAMGLVAG CCEEEEEECCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEC SDEAAFAIGYDQAATMAGMYRLDRFGGVRFEGLRRYYGFRDEDGRRWGLVDTTAAPVVLA CCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEECEEECCCCCEEEE ESPVMGMAFASTYEADEPAREDEPPTDNVGCTRHTLIDIVDGTGDVRTLRIDDAVRAAGM CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECHHHHHCCC DPSSVGTVISRLWQSPDGILRGVVRVRGCDPKADAPSYWDLVVDGRGVRLLGQRQPVSRF CHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCCEEEEEECCCCEEEECCCCCHHHH GSGAAAVTVSEGFVQGERPFAVRTGDEAEWGEFLEITGTAMGLRETSPLNRALPLPETVG CCCEEEEEEECCCCCCCCCEEEECCCCCCCCCEEEEECCEECCCCCCCCCCCCCCCHHCC DRTRLSTVRPVDNTRKLRAEYDVQRRIDGACRDSRHRVARVLLECTTAEGTHELCWAGQP CCHHCCEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCC SNTAYCLDDVTGRSVVEVRSRSGRGVGVVGASDVVGDGVVRIPLALRLIDGRTCALDSHV CCCEEEEECCCCCEEEEHHHCCCCEEEEEECCHHCCCCEEEEEEEEEEECCCEEEECCCC PPDAHDHTYTCIDGSQVLDNQNSGPTAFVADGTLFTASHRALDGTLTDIPITELFLVQSN CCCCCCCEEEEECCHHHHCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA