| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is ccrB
Identifier: 54026428
GI number: 54026428
Start: 4623911
End: 4624333
Strand: Reverse
Name: ccrB
Synonym: nfa44550
Alternate gene names: 54026428
Gene position: 4624333-4623911 (Counterclockwise)
Preceding gene: 54026431
Following gene: 54026427
Centisome position: 76.8
GC content: 69.74
Gene sequence:
>423_bases ATGAGCGCACCCGCGCGGGTACCGCCGCTCGATCCCGCGATACTGCTCGCGATCTCGCTCGGCGGCGGCCTCGGCGCCCT GCTGCGCTACCTGATCTCGACCTGGTGGCCCACACCGCCGGGGCACGTGCCGTGGGCCACCTTCGTGGTGAACGTCACCG GATGTTTCGCCATCGGCGTCCTGATGGTTCTGGTGACCGAGGCGTGGGTAACCCATCGACTGCTGCGCCCCTTCGCCGGC GTCGGTTTGCTGGGTGGTTTCACCACCTTTTCGACCTACGGCCTCGAGATTCGTACACTGCTCGAATCCGGTGCGGTGCT CGAAGCGCTCGGCTACCTCGCGGGCACGGTCCTGGCCGCGCTCGCCGGGGTGGTGCTCGGCACGGGTGCGGCGCGGTGGG CAACGGGCGCGGCACGACGGTGA
Upstream 100 bases:
>100_bases GGACGGTTGTGCCGAAGGTTTGCCGGACCGTTCCGGACGGCCCGGAAAGCGGCCGATACGATGACCCGGGCAGTGGGTCG GCGCGGGAGGAGAACAGCAG
Downstream 100 bases:
>100_bases CCCGGGCACACCGCCCGCGGTGGTTCGACGACGGCACGACGGAAGGGGGTCGGATGACCGGCCGACGGTCCGCGGAGGTG CGCGGGTGAACATCGCGCTC
Product: camphor resistance protein CrcB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MSAPARVPPLDPAILLAISLGGGLGALLRYLISTWWPTPPGHVPWATFVVNVTGCFAIGVLMVLVTEAWVTHRLLRPFAG VGLLGGFTTFSTYGLEIRTLLESGAVLEALGYLAGTVLAALAGVVLGTGAARWATGAARR
Sequences:
>Translated_140_residues MSAPARVPPLDPAILLAISLGGGLGALLRYLISTWWPTPPGHVPWATFVVNVTGCFAIGVLMVLVTEAWVTHRLLRPFAG VGLLGGFTTFSTYGLEIRTLLESGAVLEALGYLAGTVLAALAGVVLGTGAARWATGAARR >Mature_139_residues SAPARVPPLDPAILLAISLGGGLGALLRYLISTWWPTPPGHVPWATFVVNVTGCFAIGVLMVLVTEAWVTHRLLRPFAGV GLLGGFTTFSTYGLEIRTLLESGAVLEALGYLAGTVLAALAGVVLGTGAARWATGAARR
Specific function: Not Known. Overproduction Leads To Camphor Resistance And Chromosome Condensation; Deletion Increases Sensibility To Nucleoid Decondensation. Probably Interacts With The Heat-Shock Protein Cspe, Possibly Providing A Way To Anchor The Chromosome To The Mem
COG id: COG0239
COG function: function code D; Integral membrane protein possibly involved in chromosome condensation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CrcB family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): CRCB2_NOCFA (Q5YR85)
Other databases:
- EMBL: AP006618 - RefSeq: YP_120670.1 - GeneID: 3109390 - GenomeReviews: AP006618_GR - KEGG: nfa:nfa44550 - NMPDR: fig|247156.1.peg.4282 - HOGENOM: HBG753179 - OMA: LVRPFFG - BioCyc: NFAR247156:NFA44550-MONOMER - HAMAP: MF_00454 - InterPro: IPR003691 - TIGRFAMs: TIGR00494
Pfam domain/function: PF02537 CRCB
EC number: NA
Molecular weight: Translated: 14495; Mature: 14364
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x1c7549e8)-; HASH(0x1ba5ad54)-; HASH(0x1bab0cfc)-; HASH(0x1c6adea0)-;
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPARVPPLDPAILLAISLGGGLGALLRYLISTWWPTPPGHVPWATFVVNVTGCFAIGV CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH LMVLVTEAWVTHRLLRPFAGVGLLGGFTTFSTYGLEIRTLLESGAVLEALGYLAGTVLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LAGVVLGTGAARWATGAARR HHHHHHCCCCHHHCCCCCCH >Mature Secondary Structure SAPARVPPLDPAILLAISLGGGLGALLRYLISTWWPTPPGHVPWATFVVNVTGCFAIGV CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH LMVLVTEAWVTHRLLRPFAGVGLLGGFTTFSTYGLEIRTLLESGAVLEALGYLAGTVLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LAGVVLGTGAARWATGAARR HHHHHHCCCCHHHCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA