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The map label for this gene is ygcB [H]

Identifier: 54026401

GI number: 54026401

Start: 4590706

End: 4593450

Strand: Reverse

Name: ygcB [H]

Synonym: nfa44280

Alternate gene names: 54026401

Gene position: 4593450-4590706 (Counterclockwise)

Preceding gene: 54026409

Following gene: 54026400

Centisome position: 76.29

GC content: 66.48

Gene sequence:

>2745_bases
GTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGTGAGGGTGGAAGCCTTTCTCTCGTAAGGCATCTCGC
TGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGACCCATACACGGCAGCGGATCTCGGTTGGCCTCC
CTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACGCACGACATCGGGAAGCTCACGCCGGCGTTC
GCGTGCCAGGTTCCCGAGCTGGCCGATGCGATGCACGACCGAGGGCTGCGAATGCCGGATGCGCTCGGTGACCGAAAGGC
ATTGCCGCACAGCCTGGCCGGCGAGGTTACGTTGCTCGAGTTCCTGACCGGCCTGGGGTGGGACCGTGAGGTGGCCAAGA
CGTACGCCGTGGTCGCCGGTAGTCATCACGGTGTCCCGCCGACCGTCCGCGAGGTGCGGAACGCTCCGGCTCGGACCACA
CTGTTCGGCGAGGGCCAGTGGTCGCGGTCTCGCGACGAGCTGCTGCGGTTCGTCACCGAGCGGACAGGCGCGTGGGAGCT
GCTGGAGCGTTTGCGCCTAATCCCTCTGACCGTGACTCAACAAAGTCTGCTCACGGCCGCCGTCATCGTCACGGATTGGA
TCGCAAGCAATCAAGATCTCTTTCCGCTGGACGAGGCGCGTGTGTCGAGCACTGCCGCGCCGGCGGTGTGGGAGCTGCTC
GGCCTGCCGCACCCGTGGCAACCGTCTGCGTCCGAGCTGCACGACGACCCGTCGCAGCGGCGGTTCTTCTGCGACCGGTT
CGGCTGGCCGCCGTCCATTCATCCGCGTCCGCTACAGCTCGAATGTCTACGAGTCGCTGACGTAACGCCCGTTCCCGGAC
TGATGGTCGTGGAAGCGCCGATGGGCGAGGGGAAGACGGAGGCCGCGCTCGCCGCCGCCGAGATACTCGCGCAGCGGTTC
GGTCTCGGTGGCATATTCGTCGCACTGCCGACGATGGCAACCTCCGACGCGATGTTCGCGCGCGTTCGGAAGTGGGCAGA
GAACCTGCCCGTCCCACCCGCGGCGATGTTCCTCGCGCACGGGAAAGCAGCGTTGAATGCGGAATTCACCTCGCTGCATC
GCCGGGGCTTCGTCAGCATCGGCACCGATTGCGCAGACAGCGGCGTTGTCGCGCACGCCTGGTTCGTCGGCAAGAAGGGC
CCTCTGGCGAACGTGGTGGTAGGCACGATCGACCAGATCCTTCGGGCGGCCTTGAAGACCCGGCATCTGATGTTGCGCCA
TCTTGCGCTGGCCAACAAAGTGGTTGTCATCGACGAGGTGCATGCCGCGGACAGTTACATGTCGACGTACCTGTGCCGGA
GTTTGGAGTGGCTGGCTGCCTACCGGGTGCCCGTCATCCTGCTGTCGGCGACACTGCCGCCGAGCCAGCGAGAAGCACTG
GTACTGGCCTACGCACGTGGATACGGAACCGGCGACGACGAGGTCTGCCTTACCGACCACGGCTACCCGGCCATCACGCA
TTGGCCGAATCCCGAGCTGAGTACGACGGTGGCCGCGTCGGGCCGCTCGATCGCCGGCATCGAGATCGCCCACGTGGCAG
ACGATCTCGACGTATTGGCCGAACGAGTCCGTCAAGCCCTGGCGGACGGCGGCATCGCCGGGGTGGTATGCAATACCGTC
GCACGAGCGCAGGAAACCTACCTGGCCCTGGAGCGGGCTGGCTTCCCCGAAGACGAATTGCTGCTGATCCATTCACGGTT
CGTCGCCAGCCACCGCGCGGAGCTGGAGGCACGCCTGCGAGCGATGCTGGGACCGCCGGACGGTGGAACGGTGCGGCCCG
ATCGTCTCGTCGTGGTGGGCACACAGGTGATCGAACAGTCACTGGACATTGATCTCGACCTGCTGATCACCGACTTGGCG
CCGATGGACTTGCTGTTGCAACGCATCGGTCGCCTACACCGGCATGACCGGCCGGCACGTCCGCCGAAACTCGTGCGCCC
GAGCTGTTGGGTGCGGGGCGCGGACTGGAACGAGGAGCCGCCCCAACCGGTGCGGGGCTCGCAGGCTGTTTACGGCCTGG
CCCGCCTGCTGCGCTGTGCCGCGGTGCTGCGCCGGCGCGCCGCCCTGACCGTGCCCGACGATGTGCCGGGACTGGTAGCC
GACGCCTACCACGAACAGCTCGAGGTGCCCACCGACTGGCTCGCCGCCTACCACCTGGCGGAGAAGCAGTGGCACGAACA
CGTCGACCGCCAGCGAGAGAAAGCGCGAACCTATCTGTTGTCAGCTCCCTACGGCGACAATCGAACCCTCCACGGCTGGG
TGGCGACGGGAATCCCGGACGACGCCGACGGCGTCGGCGGCCAAGCCCAAGTTCGCGACGCGGAGGACACCATCGAAGCG
ATCGTCGTCCAACGGTGTGGTGACCATGTGCGGGCGCTCCCGCAAGTGCCGGAAATCGGAGGAACGACGGTGCCGACCGA
TGCGGAACCGCCGGTGTGGCTCGCCAAGAAGCTTGCCGCCTGCACCATCCGGCTGCCCGCCATGCTCACTCGCTACGGAC
GCAGCGGCACCGTCATCCGTGCACTCGAAGACACCTGGTATCCGGGATGGCAGCGGGTGCATTGGCTGGCAGGCGAATTG
GTCCTGGAACTGGATGAGCAGTGCACGGCCGAACTCGCCGGGCACCATCTCGAGTACGACACCCGGCTCGGACTTCTGGT
GGCCCCCGCGAAGGAGGGGAAATGA

Upstream 100 bases:

>100_bases
CTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGA
ACGATTCGAGGGGGAATTCG

Downstream 100 bases:

>100_bases
GTGGCGCAGCAGCAGAATTCGACCTGCTGGACGAACCCTGGATCATCGTCACCGACGCCTCGGGGAAAGCCTCGGAAGTG
TCGCTGCGACAGGTGTTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 914; Mature: 914

Protein sequence:

>914_residues
MLGTATLSAWAKSDREGGSLSLVRHLADSGEVAKLVWDRWLPTHTRQRISVGLPGGEADGRTLLVWLAATHDIGKLTPAF
ACQVPELADAMHDRGLRMPDALGDRKALPHSLAGEVTLLEFLTGLGWDREVAKTYAVVAGSHHGVPPTVREVRNAPARTT
LFGEGQWSRSRDELLRFVTERTGAWELLERLRLIPLTVTQQSLLTAAVIVTDWIASNQDLFPLDEARVSSTAAPAVWELL
GLPHPWQPSASELHDDPSQRRFFCDRFGWPPSIHPRPLQLECLRVADVTPVPGLMVVEAPMGEGKTEAALAAAEILAQRF
GLGGIFVALPTMATSDAMFARVRKWAENLPVPPAAMFLAHGKAALNAEFTSLHRRGFVSIGTDCADSGVVAHAWFVGKKG
PLANVVVGTIDQILRAALKTRHLMLRHLALANKVVVIDEVHAADSYMSTYLCRSLEWLAAYRVPVILLSATLPPSQREAL
VLAYARGYGTGDDEVCLTDHGYPAITHWPNPELSTTVAASGRSIAGIEIAHVADDLDVLAERVRQALADGGIAGVVCNTV
ARAQETYLALERAGFPEDELLLIHSRFVASHRAELEARLRAMLGPPDGGTVRPDRLVVVGTQVIEQSLDIDLDLLITDLA
PMDLLLQRIGRLHRHDRPARPPKLVRPSCWVRGADWNEEPPQPVRGSQAVYGLARLLRCAAVLRRRAALTVPDDVPGLVA
DAYHEQLEVPTDWLAAYHLAEKQWHEHVDRQREKARTYLLSAPYGDNRTLHGWVATGIPDDADGVGGQAQVRDAEDTIEA
IVVQRCGDHVRALPQVPEIGGTTVPTDAEPPVWLAKKLAACTIRLPAMLTRYGRSGTVIRALEDTWYPGWQRVHWLAGEL
VLELDEQCTAELAGHHLEYDTRLGLLVAPAKEGK

Sequences:

>Translated_914_residues
MLGTATLSAWAKSDREGGSLSLVRHLADSGEVAKLVWDRWLPTHTRQRISVGLPGGEADGRTLLVWLAATHDIGKLTPAF
ACQVPELADAMHDRGLRMPDALGDRKALPHSLAGEVTLLEFLTGLGWDREVAKTYAVVAGSHHGVPPTVREVRNAPARTT
LFGEGQWSRSRDELLRFVTERTGAWELLERLRLIPLTVTQQSLLTAAVIVTDWIASNQDLFPLDEARVSSTAAPAVWELL
GLPHPWQPSASELHDDPSQRRFFCDRFGWPPSIHPRPLQLECLRVADVTPVPGLMVVEAPMGEGKTEAALAAAEILAQRF
GLGGIFVALPTMATSDAMFARVRKWAENLPVPPAAMFLAHGKAALNAEFTSLHRRGFVSIGTDCADSGVVAHAWFVGKKG
PLANVVVGTIDQILRAALKTRHLMLRHLALANKVVVIDEVHAADSYMSTYLCRSLEWLAAYRVPVILLSATLPPSQREAL
VLAYARGYGTGDDEVCLTDHGYPAITHWPNPELSTTVAASGRSIAGIEIAHVADDLDVLAERVRQALADGGIAGVVCNTV
ARAQETYLALERAGFPEDELLLIHSRFVASHRAELEARLRAMLGPPDGGTVRPDRLVVVGTQVIEQSLDIDLDLLITDLA
PMDLLLQRIGRLHRHDRPARPPKLVRPSCWVRGADWNEEPPQPVRGSQAVYGLARLLRCAAVLRRRAALTVPDDVPGLVA
DAYHEQLEVPTDWLAAYHLAEKQWHEHVDRQREKARTYLLSAPYGDNRTLHGWVATGIPDDADGVGGQAQVRDAEDTIEA
IVVQRCGDHVRALPQVPEIGGTTVPTDAEPPVWLAKKLAACTIRLPAMLTRYGRSGTVIRALEDTWYPGWQRVHWLAGEL
VLELDEQCTAELAGHHLEYDTRLGLLVAPAKEGK
>Mature_914_residues
MLGTATLSAWAKSDREGGSLSLVRHLADSGEVAKLVWDRWLPTHTRQRISVGLPGGEADGRTLLVWLAATHDIGKLTPAF
ACQVPELADAMHDRGLRMPDALGDRKALPHSLAGEVTLLEFLTGLGWDREVAKTYAVVAGSHHGVPPTVREVRNAPARTT
LFGEGQWSRSRDELLRFVTERTGAWELLERLRLIPLTVTQQSLLTAAVIVTDWIASNQDLFPLDEARVSSTAAPAVWELL
GLPHPWQPSASELHDDPSQRRFFCDRFGWPPSIHPRPLQLECLRVADVTPVPGLMVVEAPMGEGKTEAALAAAEILAQRF
GLGGIFVALPTMATSDAMFARVRKWAENLPVPPAAMFLAHGKAALNAEFTSLHRRGFVSIGTDCADSGVVAHAWFVGKKG
PLANVVVGTIDQILRAALKTRHLMLRHLALANKVVVIDEVHAADSYMSTYLCRSLEWLAAYRVPVILLSATLPPSQREAL
VLAYARGYGTGDDEVCLTDHGYPAITHWPNPELSTTVAASGRSIAGIEIAHVADDLDVLAERVRQALADGGIAGVVCNTV
ARAQETYLALERAGFPEDELLLIHSRFVASHRAELEARLRAMLGPPDGGTVRPDRLVVVGTQVIEQSLDIDLDLLITDLA
PMDLLLQRIGRLHRHDRPARPPKLVRPSCWVRGADWNEEPPQPVRGSQAVYGLARLLRCAAVLRRRAALTVPDDVPGLVA
DAYHEQLEVPTDWLAAYHLAEKQWHEHVDRQREKARTYLLSAPYGDNRTLHGWVATGIPDDADGVGGQAQVRDAEDTIEA
IVVQRCGDHVRALPQVPEIGGTTVPTDAEPPVWLAKKLAACTIRLPAMLTRYGRSGTVIRALEDTWYPGWQRVHWLAGEL
VLELDEQCTAELAGHHLEYDTRLGLLVAPAKEGK

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=407, Percent_Identity=36.8550368550369, Blast_Score=194, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 99966; Mature: 99966

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGTATLSAWAKSDREGGSLSLVRHLADSGEVAKLVWDRWLPTHTRQRISVGLPGGEADG
CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
RTLLVWLAATHDIGKLTPAFACQVPELADAMHDRGLRMPDALGDRKALPHSLAGEVTLLE
CEEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHCCCCCCHHCCCCCCCCHHHCCHHHHHH
FLTGLGWDREVAKTYAVVAGSHHGVPPTVREVRNAPARTTLFGEGQWSRSRDELLRFVTE
HHHCCCCCHHHHHHHHHEECCCCCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
RTGAWELLERLRLIPLTVTQQSLLTAAVIVTDWIASNQDLFPLDEARVSSTAAPAVWELL
CCCHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHH
GLPHPWQPSASELHDDPSQRRFFCDRFGWPPSIHPRPLQLECLRVADVTPVPGLMVVEAP
CCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
MGEGKTEAALAAAEILAQRFGLGGIFVALPTMATSDAMFARVRKWAENLPVPPAAMFLAH
CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
GKAALNAEFTSLHRRGFVSIGTDCADSGVVAHAWFVGKKGPLANVVVGTIDQILRAALKT
CCHHHCHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
RHLMLRHLALANKVVVIDEVHAADSYMSTYLCRSLEWLAAYRVPVILLSATLPPSQREAL
HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEE
VLAYARGYGTGDDEVCLTDHGYPAITHWPNPELSTTVAASGRSIAGIEIAHVADDLDVLA
EEEEECCCCCCCCCEEEECCCCCCEECCCCCCCCEEEECCCCCCCCEEHHHHHHHHHHHH
ERVRQALADGGIAGVVCNTVARAQETYLALERAGFPEDELLLIHSRFVASHRAELEARLR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHH
AMLGPPDGGTVRPDRLVVVGTQVIEQSLDIDLDLLITDLAPMDLLLQRIGRLHRHDRPAR
HHCCCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
PPKLVRPSCWVRGADWNEEPPQPVRGSQAVYGLARLLRCAAVLRRRAALTVPDDVPGLVA
CCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
DAYHEQLEVPTDWLAAYHLAEKQWHEHVDRQREKARTYLLSAPYGDNRTLHGWVATGIPD
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEEECCCCC
DADGVGGQAQVRDAEDTIEAIVVQRCGDHVRALPQVPEIGGTTVPTDAEPPVWLAKKLAA
CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
CTIRLPAMLTRYGRSGTVIRALEDTWYPGWQRVHWLAGELVLELDEQCTAELAGHHLEYD
HHHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TRLGLLVAPAKEGK
CCCCEEEECCCCCC
>Mature Secondary Structure
MLGTATLSAWAKSDREGGSLSLVRHLADSGEVAKLVWDRWLPTHTRQRISVGLPGGEADG
CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
RTLLVWLAATHDIGKLTPAFACQVPELADAMHDRGLRMPDALGDRKALPHSLAGEVTLLE
CEEEEEEEECCCCCCCCHHHHCCCHHHHHHHHHCCCCCCHHCCCCCCCCHHHCCHHHHHH
FLTGLGWDREVAKTYAVVAGSHHGVPPTVREVRNAPARTTLFGEGQWSRSRDELLRFVTE
HHHCCCCCHHHHHHHHHEECCCCCCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
RTGAWELLERLRLIPLTVTQQSLLTAAVIVTDWIASNQDLFPLDEARVSSTAAPAVWELL
CCCHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHH
GLPHPWQPSASELHDDPSQRRFFCDRFGWPPSIHPRPLQLECLRVADVTPVPGLMVVEAP
CCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
MGEGKTEAALAAAEILAQRFGLGGIFVALPTMATSDAMFARVRKWAENLPVPPAAMFLAH
CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHC
GKAALNAEFTSLHRRGFVSIGTDCADSGVVAHAWFVGKKGPLANVVVGTIDQILRAALKT
CCHHHCHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
RHLMLRHLALANKVVVIDEVHAADSYMSTYLCRSLEWLAAYRVPVILLSATLPPSQREAL
HHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEE
VLAYARGYGTGDDEVCLTDHGYPAITHWPNPELSTTVAASGRSIAGIEIAHVADDLDVLA
EEEEECCCCCCCCCEEEECCCCCCEECCCCCCCCEEEECCCCCCCCEEHHHHHHHHHHHH
ERVRQALADGGIAGVVCNTVARAQETYLALERAGFPEDELLLIHSRFVASHRAELEARLR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHH
AMLGPPDGGTVRPDRLVVVGTQVIEQSLDIDLDLLITDLAPMDLLLQRIGRLHRHDRPAR
HHCCCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
PPKLVRPSCWVRGADWNEEPPQPVRGSQAVYGLARLLRCAAVLRRRAALTVPDDVPGLVA
CCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
DAYHEQLEVPTDWLAAYHLAEKQWHEHVDRQREKARTYLLSAPYGDNRTLHGWVATGIPD
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEEECCCCC
DADGVGGQAQVRDAEDTIEAIVVQRCGDHVRALPQVPEIGGTTVPTDAEPPVWLAKKLAA
CCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
CTIRLPAMLTRYGRSGTVIRALEDTWYPGWQRVHWLAGELVLELDEQCTAELAGHHLEYD
HHHHHHHHHHHCCCCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TRLGLLVAPAKEGK
CCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]