Click here to switch to the map view.

The map label for this gene is 54026409

Identifier: 54026409

GI number: 54026409

Start: 4603467

End: 4603832

Strand: Reverse

Name: 54026409

Synonym: nfa44360

Alternate gene names: NA

Gene position: 4603832-4603467 (Counterclockwise)

Preceding gene: 54026415

Following gene: 54026401

Centisome position: 76.46

GC content: 65.03

Gene sequence:

>366_bases
TTGTTCGACGCGCACCGCGACGACCCCGGGTTCGGGTACCGGTTTTTGGCCGATGAAGCCCGCGAAGCCGGTGAATCGAT
GGCTGAGCGGACCGCGTGGCGGATCTGTTCGAGCAATCGGCGGTGGAGCGTGTTCCGCATACGCCGGGGCGGCAAGAGCG
GACGGCCGGGTCCACCGGTCCACGATGACCTCGTCTGCCGGAACTTCACCGGCGATGAACGAAACCGGTTGTCGCTCGGT
GGTATTACCGAGCGCCGCACCGATGAGGGAAAGCTCTATCTGTGCGCGATCAAGGGTGTGTTCTCCGGGCGGATCGTAGG
CCCGGTGCGGTACTCGAGTCGTCCGACGAAGTGTGGGCGGTGGTGA

Upstream 100 bases:

>100_bases
ACGTGCCGGGTCCTGCAGCTCGCTGGCGAACCCTACTGCCGGTGGCTGGCCGAACCGGTGACCCTCGGCGGGATCGCCGA
GGCGTATTGAGTCAACGTAT

Downstream 100 bases:

>100_bases
GTCGCCTGTTCCGTGGACGATCGGCGGTCTCGGAAGGAACTGGCCTCCGCGGTACCTCCAGGGAATCGACCGCACGGGTG
CTGACCCGTGGGGCAGTTCG

Product: putative transposase

Products: NA

Alternate protein names: Integrase Catalytic Region; Transposase Subunit; Integrase Catalytic Subunit; Integrase; Transposase For Insertion Sequence; Integrase Catalytic Domain-Containing Protein; Transposase N-Terminal; ISMsm7 Transposase OrfB

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MFDAHRDDPGFGYRFLADEAREAGESMAERTAWRICSSNRRWSVFRIRRGGKSGRPGPPVHDDLVCRNFTGDERNRLSLG
GITERRTDEGKLYLCAIKGVFSGRIVGPVRYSSRPTKCGRW

Sequences:

>Translated_121_residues
MFDAHRDDPGFGYRFLADEAREAGESMAERTAWRICSSNRRWSVFRIRRGGKSGRPGPPVHDDLVCRNFTGDERNRLSLG
GITERRTDEGKLYLCAIKGVFSGRIVGPVRYSSRPTKCGRW
>Mature_121_residues
MFDAHRDDPGFGYRFLADEAREAGESMAERTAWRICSSNRRWSVFRIRRGGKSGRPGPPVHDDLVCRNFTGDERNRLSLG
GITERRTDEGKLYLCAIKGVFSGRIVGPVRYSSRPTKCGRW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13767; Mature: 13767

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDAHRDDPGFGYRFLADEAREAGESMAERTAWRICSSNRRWSVFRIRRGGKSGRPGPPV
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
HDDLVCRNFTGDERNRLSLGGITERRTDEGKLYLCAIKGVFSGRIVGPVRYSSRPTKCGR
CCCEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEECCEECCCCCCCCCC
W
C
>Mature Secondary Structure
MFDAHRDDPGFGYRFLADEAREAGESMAERTAWRICSSNRRWSVFRIRRGGKSGRPGPPV
CCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
HDDLVCRNFTGDERNRLSLGGITERRTDEGKLYLCAIKGVFSGRIVGPVRYSSRPTKCGR
CCCEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEECCEECCCCCCCCCC
W
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA