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The map label for this gene is 54026400

Identifier: 54026400

GI number: 54026400

Start: 4589051

End: 4590709

Strand: Reverse

Name: 54026400

Synonym: nfa44270

Alternate gene names: NA

Gene position: 4590709-4589051 (Counterclockwise)

Preceding gene: 54026401

Following gene: 54026399

Centisome position: 76.24

GC content: 66.73

Gene sequence:

>1659_bases
ATGAGTGGCGCAGCAGCAGAATTCGACCTGCTGGACGAACCCTGGATCATCGTCACCGACGCCTCGGGGAAAGCCTCGGA
AGTGTCGCTGCGACAGGTGTTCCGGCGGGCGGACGAGTACGTTGCCATCGGTGGCGAGGTGCCGACGCAGCAATTCGCAA
TCCTTCGGCTGCTTTTGGCAATCCTCCATCGAACAGTCGCCGATCGGCCGGGCACCGCGATCGATGTCTGGTCGCGGTTG
TGGCGGGAATGGCCGGCCGACGACATCGACCGGTACCTGCTCGCGCACCGCGATCGATTCGACCTGTTCCACCCGAGCAC
CCCCTTCTTCCAAGTCGCTGATCTCCGGTCCGCCAAGGACGGGGTGAGTTCGTTGGACAAACTCATCGCGGATGTGCCGA
ACGGCGACAAGTACTTCACCACCCGTGCCGGACGGGGTCTCGACCACATCGACTTCGGTGAGGCTGCCCGGTGGCTGGTG
CACGCGCACGCCTTCGATCCCTCGGGGATCAAGACCGGCGCCGTGGGGGACGCGCGGGTGAAAGGCGGCAAGGGGTATCC
GATCGGCGTCGCCTGGGCAGGGTCCCTCGGCGGTGTGTACCTCGAAGGTGGCGACCTGCGCCGGACCCTGCTGCTCAATC
TGGTGCTCGCCGATCCCGACGGCGATCGGTATCCCGACCATGACCTGCCGCCCTGGGAACGTGACCCGGACGGGCCTGCC
GTGCGCGACATCACCGGGCCGAGCGGGCCGGTCGATTTGTTCACGTGGCAAAGCCGTCGCGTCCGGCTCGTGAACTCCGG
CGCGCAGGTGACCGGCGTGGTGCTGTGCAACGGGGACGCGTTGGAGTCGTTCAACAAGCAGCTCCTCGAACCGATGACGG
GCTGGCGCTACAGCGAGAACCAGTCGAAGAAGGCGGGCGAGACGCGGCACTATCCGATGGTGCATGACCCGGAGAAGTCG
CTGTGGCGTGGCTTGCGCTCGCTACTGGGCGACGTCGCGAGCTCTGAGCCCGTGGCCGGTCGCGCCATCGCCCCGGGGGT
CGTCGAATGGGCCGCGACGCTCCTCGATGCCGGGGCGTTGCCACCAGACCAGCCGATTCGCCTGCACGCGGTCGGCATGC
ACTACATCAACAACCTGTCGATCGTCGGGGACATCGTCGACGATGCCATCGGATTCCGTGCCGCGATGCTCGCGTCGGAT
CCGCGTTTGCGGATCTGCGCGGTCGCCGCGGTGCAGATCGCCGAGGAGGCGGTCGACGCACTGGCGAATCTGGCGGCAGA
CCTCGCCGCCGCAGCGGGCGGTGAACCCACCGGTGCGCGAATGCGAGCGCGCGAGGAGGGCTTCTTCGCCCTCGAAGCGC
CCTACCGGCGATGGCTCGCTGGACTCGTCCCGCAATCCACCGGCTACGCCCGGCAAGCAGCCGAGTGGGAGCAGACGGCA
TTCGTGATCGTTCGCCGTCTCGGCACCGAATACATTGCCGCGGCAGGCGATGTGGCGTGGGTCGGGCGGCCGGTGCGCGA
GAAGTGGCTGGACTCCAGTATCGCCGAGCGCTGGTTCTACAAGAAACTGCGCGCCGTGCTGCCGTCGGCATTCACCGAAC
ACCGTGACACTCAAGAAAAGGAGCCAACGGATGGGGAACGTGTCGCTGTCGTTTGGTGA

Upstream 100 bases:

>100_bases
TCCTGGAACTGGATGAGCAGTGCACGGCCGAACTCGCCGGGCACCATCTCGAGTACGACACCCGGCTCGGACTTCTGGTG
GCCCCCGCGAAGGAGGGGAA

Downstream 100 bases:

>100_bases
GCGCGAGAAGGCGCTGGCCGAGTACGTCGGCAAGCAGGTCACCACGCTCCAAGAAGCGTATCGGCGCAAGGACGGCAACG
GACTCGCGGCCATGGCGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Cse1 Family Protein; CRISPR-Associated Protein; Crispr-Associated Protein; CRISPR-Associated Cas1 Family Protein; Cse1 Family CRISPR-Associated Protein; CRISPR-Associated Helicase; CRISPR-Associated Helicase Cas3 Family Protein Protein

Number of amino acids: Translated: 552; Mature: 551

Protein sequence:

>552_residues
MSGAAAEFDLLDEPWIIVTDASGKASEVSLRQVFRRADEYVAIGGEVPTQQFAILRLLLAILHRTVADRPGTAIDVWSRL
WREWPADDIDRYLLAHRDRFDLFHPSTPFFQVADLRSAKDGVSSLDKLIADVPNGDKYFTTRAGRGLDHIDFGEAARWLV
HAHAFDPSGIKTGAVGDARVKGGKGYPIGVAWAGSLGGVYLEGGDLRRTLLLNLVLADPDGDRYPDHDLPPWERDPDGPA
VRDITGPSGPVDLFTWQSRRVRLVNSGAQVTGVVLCNGDALESFNKQLLEPMTGWRYSENQSKKAGETRHYPMVHDPEKS
LWRGLRSLLGDVASSEPVAGRAIAPGVVEWAATLLDAGALPPDQPIRLHAVGMHYINNLSIVGDIVDDAIGFRAAMLASD
PRLRICAVAAVQIAEEAVDALANLAADLAAAAGGEPTGARMRAREEGFFALEAPYRRWLAGLVPQSTGYARQAAEWEQTA
FVIVRRLGTEYIAAAGDVAWVGRPVREKWLDSSIAERWFYKKLRAVLPSAFTEHRDTQEKEPTDGERVAVVW

Sequences:

>Translated_552_residues
MSGAAAEFDLLDEPWIIVTDASGKASEVSLRQVFRRADEYVAIGGEVPTQQFAILRLLLAILHRTVADRPGTAIDVWSRL
WREWPADDIDRYLLAHRDRFDLFHPSTPFFQVADLRSAKDGVSSLDKLIADVPNGDKYFTTRAGRGLDHIDFGEAARWLV
HAHAFDPSGIKTGAVGDARVKGGKGYPIGVAWAGSLGGVYLEGGDLRRTLLLNLVLADPDGDRYPDHDLPPWERDPDGPA
VRDITGPSGPVDLFTWQSRRVRLVNSGAQVTGVVLCNGDALESFNKQLLEPMTGWRYSENQSKKAGETRHYPMVHDPEKS
LWRGLRSLLGDVASSEPVAGRAIAPGVVEWAATLLDAGALPPDQPIRLHAVGMHYINNLSIVGDIVDDAIGFRAAMLASD
PRLRICAVAAVQIAEEAVDALANLAADLAAAAGGEPTGARMRAREEGFFALEAPYRRWLAGLVPQSTGYARQAAEWEQTA
FVIVRRLGTEYIAAAGDVAWVGRPVREKWLDSSIAERWFYKKLRAVLPSAFTEHRDTQEKEPTDGERVAVVW
>Mature_551_residues
SGAAAEFDLLDEPWIIVTDASGKASEVSLRQVFRRADEYVAIGGEVPTQQFAILRLLLAILHRTVADRPGTAIDVWSRLW
REWPADDIDRYLLAHRDRFDLFHPSTPFFQVADLRSAKDGVSSLDKLIADVPNGDKYFTTRAGRGLDHIDFGEAARWLVH
AHAFDPSGIKTGAVGDARVKGGKGYPIGVAWAGSLGGVYLEGGDLRRTLLLNLVLADPDGDRYPDHDLPPWERDPDGPAV
RDITGPSGPVDLFTWQSRRVRLVNSGAQVTGVVLCNGDALESFNKQLLEPMTGWRYSENQSKKAGETRHYPMVHDPEKSL
WRGLRSLLGDVASSEPVAGRAIAPGVVEWAATLLDAGALPPDQPIRLHAVGMHYINNLSIVGDIVDDAIGFRAAMLASDP
RLRICAVAAVQIAEEAVDALANLAADLAAAAGGEPTGARMRAREEGFFALEAPYRRWLAGLVPQSTGYARQAAEWEQTAF
VIVRRLGTEYIAAAGDVAWVGRPVREKWLDSSIAERWFYKKLRAVLPSAFTEHRDTQEKEPTDGERVAVVW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60489; Mature: 60358

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAAAEFDLLDEPWIIVTDASGKASEVSLRQVFRRADEYVAIGGEVPTQQFAILRLLLA
CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
ILHRTVADRPGTAIDVWSRLWREWPADDIDRYLLAHRDRFDLFHPSTPFFQVADLRSAKD
HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHH
GVSSLDKLIADVPNGDKYFTTRAGRGLDHIDFGEAARWLVHAHAFDPSGIKTGAVGDARV
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCEE
KGGKGYPIGVAWAGSLGGVYLEGGDLRRTLLLNLVLADPDGDRYPDHDLPPWERDPDGPA
CCCCCCEEEEEECCCCCCEEEECCCHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
VRDITGPSGPVDLFTWQSRRVRLVNSGAQVTGVVLCNGDALESFNKQLLEPMTGWRYSEN
EECCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
QSKKAGETRHYPMVHDPEKSLWRGLRSLLGDVASSEPVAGRAIAPGVVEWAATLLDAGAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
PPDQPIRLHAVGMHYINNLSIVGDIVDDAIGFRAAMLASDPRLRICAVAAVQIAEEAVDA
CCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
LANLAADLAAAAGGEPTGARMRAREEGFFALEAPYRRWLAGLVPQSTGYARQAAEWEQTA
HHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHH
FVIVRRLGTEYIAAAGDVAWVGRPVREKWLDSSIAERWFYKKLRAVLPSAFTEHRDTQEK
HHHHHHHCHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EPTDGERVAVVW
CCCCCCEEEEEC
>Mature Secondary Structure 
SGAAAEFDLLDEPWIIVTDASGKASEVSLRQVFRRADEYVAIGGEVPTQQFAILRLLLA
CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
ILHRTVADRPGTAIDVWSRLWREWPADDIDRYLLAHRDRFDLFHPSTPFFQVADLRSAKD
HHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHH
GVSSLDKLIADVPNGDKYFTTRAGRGLDHIDFGEAARWLVHAHAFDPSGIKTGAVGDARV
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCEE
KGGKGYPIGVAWAGSLGGVYLEGGDLRRTLLLNLVLADPDGDRYPDHDLPPWERDPDGPA
CCCCCCEEEEEECCCCCCEEEECCCHHHEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
VRDITGPSGPVDLFTWQSRRVRLVNSGAQVTGVVLCNGDALESFNKQLLEPMTGWRYSEN
EECCCCCCCCEEEEEECCCEEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
QSKKAGETRHYPMVHDPEKSLWRGLRSLLGDVASSEPVAGRAIAPGVVEWAATLLDAGAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
PPDQPIRLHAVGMHYINNLSIVGDIVDDAIGFRAAMLASDPRLRICAVAAVQIAEEAVDA
CCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
LANLAADLAAAAGGEPTGARMRAREEGFFALEAPYRRWLAGLVPQSTGYARQAAEWEQTA
HHHHHHHHHHHCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHH
FVIVRRLGTEYIAAAGDVAWVGRPVREKWLDSSIAERWFYKKLRAVLPSAFTEHRDTQEK
HHHHHHHCHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EPTDGERVAVVW
CCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA