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The map label for this gene is 54026399

Identifier: 54026399

GI number: 54026399

Start: 4588429

End: 4589079

Strand: Reverse

Name: 54026399

Synonym: nfa44260

Alternate gene names: NA

Gene position: 4589079-4588429 (Counterclockwise)

Preceding gene: 54026400

Following gene: 54026398

Centisome position: 76.22

GC content: 68.82

Gene sequence:

>651_bases
ATGGGGAACGTGTCGCTGTCGTTTGGTGAGCGCGAGAAGGCGCTGGCCGAGTACGTCGGCAAGCAGGTCACCACGCTCCA
AGAAGCGTATCGGCGCAAGGACGGCAACGGACTCGCGGCCATGGCGAAACTTCGTCGCGGCGTCGGCCGCGCGGCGGGCG
CCGACCCCGCACTGTGGGAGTTCACCCTGGCCGAGTTCCCGGAGGCGATCACCGACCAGCTGTCATGGGATGAGCGCGAC
GGGGTGGCGACCGTATGGGAGCGCGCAGCCTACGACGCCATCACCCTGCACGCGGTCCATCAACAGTCGCGCACCGGCCG
CATGCACCAGAAAGGACGCTCGGTCGGCGCGGCTGCCGCGTTGCTCGGCAGACAGGCGGACGCCGAGAACGCCGTGCGCG
CCCGGTTTCACGCACTGGGCACCGCGCTCGATCACGACGCGCGCTTGGTGCATCTCCGCGGCCTGATCTCGCAGCTGCGC
AATCACGAAATTTCGCTCGACTACGCCCGCCTCGCCGTCGACCTCCGCCGCCTGGACGACGGCACTTACGCCGATCGAGT
GCTACTCGCGTGGGGCCGCGACTACCACCGCTCGCCCAAGGCGGGCCCGACTTCCGACGATGACACCCCTGCGACAGGAG
ACCAGCAGTGA

Upstream 100 bases:

>100_bases
GACTCCAGTATCGCCGAGCGCTGGTTCTACAAGAAACTGCGCGCCGTGCTGCCGTCGGCATTCACCGAACACCGTGACAC
TCAAGAAAAGGAGCCAACGG

Downstream 100 bases:

>100_bases
CCAGGCTTTTCATCGATGTCCACATCCTGCAGACCGTGCCTCCCAGCAACGTGAACCGCGACGACACGGGTAGTCCGAAA
ACCGCCGTCTACGGGGGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: CRISPR-Associated Protein; CRISPR-Associated Protein Cse2 Family; Cse2 Family CRISPR-Associated Protein

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MGNVSLSFGEREKALAEYVGKQVTTLQEAYRRKDGNGLAAMAKLRRGVGRAAGADPALWEFTLAEFPEAITDQLSWDERD
GVATVWERAAYDAITLHAVHQQSRTGRMHQKGRSVGAAAALLGRQADAENAVRARFHALGTALDHDARLVHLRGLISQLR
NHEISLDYARLAVDLRRLDDGTYADRVLLAWGRDYHRSPKAGPTSDDDTPATGDQQ

Sequences:

>Translated_216_residues
MGNVSLSFGEREKALAEYVGKQVTTLQEAYRRKDGNGLAAMAKLRRGVGRAAGADPALWEFTLAEFPEAITDQLSWDERD
GVATVWERAAYDAITLHAVHQQSRTGRMHQKGRSVGAAAALLGRQADAENAVRARFHALGTALDHDARLVHLRGLISQLR
NHEISLDYARLAVDLRRLDDGTYADRVLLAWGRDYHRSPKAGPTSDDDTPATGDQQ
>Mature_215_residues
GNVSLSFGEREKALAEYVGKQVTTLQEAYRRKDGNGLAAMAKLRRGVGRAAGADPALWEFTLAEFPEAITDQLSWDERDG
VATVWERAAYDAITLHAVHQQSRTGRMHQKGRSVGAAAALLGRQADAENAVRARFHALGTALDHDARLVHLRGLISQLRN
HEISLDYARLAVDLRRLDDGTYADRVLLAWGRDYHRSPKAGPTSDDDTPATGDQQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23756; Mature: 23625

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNVSLSFGEREKALAEYVGKQVTTLQEAYRRKDGNGLAAMAKLRRGVGRAAGADPALWE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHH
FTLAEFPEAITDQLSWDERDGVATVWERAAYDAITLHAVHQQSRTGRMHQKGRSVGAAAA
HHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGRQADAENAVRARFHALGTALDHDARLVHLRGLISQLRNHEISLDYARLAVDLRRLDD
HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
GTYADRVLLAWGRDYHRSPKAGPTSDDDTPATGDQQ
CCHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GNVSLSFGEREKALAEYVGKQVTTLQEAYRRKDGNGLAAMAKLRRGVGRAAGADPALWE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHH
FTLAEFPEAITDQLSWDERDGVATVWERAAYDAITLHAVHQQSRTGRMHQKGRSVGAAAA
HHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGRQADAENAVRARFHALGTALDHDARLVHLRGLISQLRNHEISLDYARLAVDLRRLDD
HHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
GTYADRVLLAWGRDYHRSPKAGPTSDDDTPATGDQQ
CCHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA