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The map label for this gene is 54026362

Identifier: 54026362

GI number: 54026362

Start: 4549887

End: 4550498

Strand: Reverse

Name: 54026362

Synonym: nfa43910

Alternate gene names: NA

Gene position: 4550498-4549887 (Counterclockwise)

Preceding gene: 54026367

Following gene: 54026360

Centisome position: 75.57

GC content: 74.67

Gene sequence:

>612_bases
GTGGTGGCGGAGACGGCGAAGCCCGAGACCGGGCGCAGGCGCAGGCGCGGCGCCGCCCTGGAGGAGGCGATCCTGACCGC
CGCGGCGGCCGAACTCCTCGAATCCGGGTACGCGGGTCTGACGATGGAGAAGGTCGCCGCCCGCGCCCGCACCAACAAGA
ACGCCATCTACCGCCGCTGGCCGCACCGGCTGGCCCTCGCCGTCGCCGCCTACCGGCAGGTGGCCACCGCGGTCGCCCCG
CCCGACACCGGGGACCTGCGCGAGGACGCCCTGGAACTGCTGCGCCGGGCGAACCGGCACTGGAGCTCACCACTGGGGGC
GATCCTGCGCGAGCTGATGGCGGCCGCCGGCGGGGCGCCGGAATTCCTGGCCCAGCTCCCGGACCAATCCACCGACGCGG
TGGCCGCAGTCTGGCTCACTGTGCTCGGCAGGGCGGTCGCGCGCGGGCAGGCAGCCCCGGAAGCCTTGCACCCGCGGGTG
GCGACGGTGCCGATCGTGCTGTTGCGCAACGAATTCGTGGTGCGCGGGGTGCCGACGGCTCCCGAGGGCGTGCTGACCGA
GATCGTCGACGAGATCTTCCTGCCGCTGGTGCGCGGACGCGCGCCGGGCTGA

Upstream 100 bases:

>100_bases
TTCGGTGCCTCTCCACGCGTGGTCGTTTACGGTACGTACCGTACTCTAAGCTTGGGGATGGGCCAAGAACGTAGGATCGG
CGGACAGCGGCGGAAGGGGT

Downstream 100 bases:

>100_bases
CCGGAGAGGTGGCTCAGCCCGGATCGGCGGCCGTGCGGGCCGACTCGATGCGTGCCGCGCAGGCCGCGAGGGTCTCGGCC
GCGCCGGAGGGCGGGGCCTC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MVAETAKPETGRRRRRGAALEEAILTAAAAELLESGYAGLTMEKVAARARTNKNAIYRRWPHRLALAVAAYRQVATAVAP
PDTGDLREDALELLRRANRHWSSPLGAILRELMAAAGGAPEFLAQLPDQSTDAVAAVWLTVLGRAVARGQAAPEALHPRV
ATVPIVLLRNEFVVRGVPTAPEGVLTEIVDEIFLPLVRGRAPG

Sequences:

>Translated_203_residues
MVAETAKPETGRRRRRGAALEEAILTAAAAELLESGYAGLTMEKVAARARTNKNAIYRRWPHRLALAVAAYRQVATAVAP
PDTGDLREDALELLRRANRHWSSPLGAILRELMAAAGGAPEFLAQLPDQSTDAVAAVWLTVLGRAVARGQAAPEALHPRV
ATVPIVLLRNEFVVRGVPTAPEGVLTEIVDEIFLPLVRGRAPG
>Mature_203_residues
MVAETAKPETGRRRRRGAALEEAILTAAAAELLESGYAGLTMEKVAARARTNKNAIYRRWPHRLALAVAAYRQVATAVAP
PDTGDLREDALELLRRANRHWSSPLGAILRELMAAAGGAPEFLAQLPDQSTDAVAAVWLTVLGRAVARGQAAPEALHPRV
ATVPIVLLRNEFVVRGVPTAPEGVLTEIVDEIFLPLVRGRAPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21757; Mature: 21757

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAETAKPETGRRRRRGAALEEAILTAAAAELLESGYAGLTMEKVAARARTNKNAIYRRW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHH
PHRLALAVAAYRQVATAVAPPDTGDLREDALELLRRANRHWSSPLGAILRELMAAAGGAP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
EFLAQLPDQSTDAVAAVWLTVLGRAVARGQAAPEALHPRVATVPIVLLRNEFVVRGVPTA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCHHCCCCCCC
PEGVLTEIVDEIFLPLVRGRAPG
CHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVAETAKPETGRRRRRGAALEEAILTAAAAELLESGYAGLTMEKVAARARTNKNAIYRRW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHH
PHRLALAVAAYRQVATAVAPPDTGDLREDALELLRRANRHWSSPLGAILRELMAAAGGAP
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
EFLAQLPDQSTDAVAAVWLTVLGRAVARGQAAPEALHPRVATVPIVLLRNEFVVRGVPTA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCHHCCCCCCC
PEGVLTEIVDEIFLPLVRGRAPG
CHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]