| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is yeiH [C]
Identifier: 54026360
GI number: 54026360
Start: 4547859
End: 4548866
Strand: Reverse
Name: yeiH [C]
Synonym: nfa43890
Alternate gene names: 54026360
Gene position: 4548866-4547859 (Counterclockwise)
Preceding gene: 54026362
Following gene: 54026359
Centisome position: 75.55
GC content: 76.09
Gene sequence:
>1008_bases GTGAACACCCTGCGCCCCGCCGTCCCCGGTCTCCTGCTCGCCGCCGTCCTCGCCACCGTGGCCACCGTCGTCGGGCGGCT CGTGCCGGTCGCGGGCGCGCCGGTCACCGCCTTGGCCGCGGGTGCGCTGACCGGTGTCGCCGCGCGCCGGGCGGTCGCCG ACGACGGCCGCTTCGGCCCCGGCCTCGACCTGACCCGGCAGCGGGTGCTCGGGATCGCCATCGTGTTGCTGGGGCTCGGG CTGCCGCTGGACGCGGTGCTCACCGTCGGGCGGGAGACCGCCGTCGTGCTGCTGGGCACCCTGGTGGCCGGAGCGGTGGC CGCGCTCGTGGTCGGGCGGCTGCTCGCCCTGCATCGCGAGTCGGGCATCCTCATCGCGGCCGGAACCACGATCTGCGGCG CCTCGGCCATCGCCGCGGTCACCGCCGTCATCAAGCCCAGCCGGGACCGGGTCGCCTACGCGCTGGGCACCATCTTCGTG TTCAACATCCTGGCCGTGCTGGTCTACCCGCCGCTGGGCCACGCGCTCGGCCTCTCCGAGGAGGCGTTCGGGCTGTGGGC GGGTACCGCCATCAACGACACCTCCTCGGTGCTGGCGGCCGGGGTCGCCTTCGGCCCGGTCGCGGCGTCCTTCGCGGTGA TCGTGAAGCTGGTCCGCAGCCTGATGATCGTCCCGCTGTGCGTCGGCCTGCACCTGGCGGGCCGCCGCGGCGCCGTGCGG GAGGCCGCCGAGCCCACCCCGCTGTGGCGCACCATCCCGCTGTTCGTCGTGCTGTTCCTCGCCGCCTCCGTCGTCGCCGG ACTCGGGGTACTGCCGTCCGCCTGGACGGCGGGCCTCACCCACCTCAGCGGCTGGCTGGTCGCCGCCGTCCTCGCCGCCG TCGGCGCCGGGCTGGACTGGCGCCGACTGGCCGCCACCGGCCCGCGTCCGCTGGTCTACGGCGGGATCCTCGGCCTCGTG CTGGCCGGCTCCGCCCTGGCACTGCAGGCCGCGACCGGCTGGCTGTGA
Upstream 100 bases:
>100_bases AGGTCGGGTGTCCCCGGCGGCAGGGTCATAACCGCAGTTTATGGGGTCAGACGAAGTTGCCCGCTACCGGTCCGGGCCGC GCGCGAGGAATGTCGACGGG
Downstream 100 bases:
>100_bases CCGCCACCGGCAATCGGGCATCTTTTGACGGAAACGGGGAATTCGGACACCGAGGCCCGTGGCGGAACTATCCTGTCGCC ACCGAACCCGAGTCGGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MNTLRPAVPGLLLAAVLATVATVVGRLVPVAGAPVTALAAGALTGVAARRAVADDGRFGPGLDLTRQRVLGIAIVLLGLG LPLDAVLTVGRETAVVLLGTLVAGAVAALVVGRLLALHRESGILIAAGTTICGASAIAAVTAVIKPSRDRVAYALGTIFV FNILAVLVYPPLGHALGLSEEAFGLWAGTAINDTSSVLAAGVAFGPVAASFAVIVKLVRSLMIVPLCVGLHLAGRRGAVR EAAEPTPLWRTIPLFVVLFLAASVVAGLGVLPSAWTAGLTHLSGWLVAAVLAAVGAGLDWRRLAATGPRPLVYGGILGLV LAGSALALQAATGWL
Sequences:
>Translated_335_residues MNTLRPAVPGLLLAAVLATVATVVGRLVPVAGAPVTALAAGALTGVAARRAVADDGRFGPGLDLTRQRVLGIAIVLLGLG LPLDAVLTVGRETAVVLLGTLVAGAVAALVVGRLLALHRESGILIAAGTTICGASAIAAVTAVIKPSRDRVAYALGTIFV FNILAVLVYPPLGHALGLSEEAFGLWAGTAINDTSSVLAAGVAFGPVAASFAVIVKLVRSLMIVPLCVGLHLAGRRGAVR EAAEPTPLWRTIPLFVVLFLAASVVAGLGVLPSAWTAGLTHLSGWLVAAVLAAVGAGLDWRRLAATGPRPLVYGGILGLV LAGSALALQAATGWL >Mature_335_residues MNTLRPAVPGLLLAAVLATVATVVGRLVPVAGAPVTALAAGALTGVAARRAVADDGRFGPGLDLTRQRVLGIAIVLLGLG LPLDAVLTVGRETAVVLLGTLVAGAVAALVVGRLLALHRESGILIAAGTTICGASAIAAVTAVIKPSRDRVAYALGTIFV FNILAVLVYPPLGHALGLSEEAFGLWAGTAINDTSSVLAAGVAFGPVAASFAVIVKLVRSLMIVPLCVGLHLAGRRGAVR EAAEPTPLWRTIPLFVVLFLAASVVAGLGVLPSAWTAGLTHLSGWLVAAVLAAVGAGLDWRRLAATGPRPLVYGGILGLV LAGSALALQAATGWL
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=319, Percent_Identity=29.4670846394984, Blast_Score=112, Evalue=4e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 33524; Mature: 33524
Theoretical pI: Translated: 11.42; Mature: 11.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLRPAVPGLLLAAVLATVATVVGRLVPVAGAPVTALAAGALTGVAARRAVADDGRFGP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC GLDLTRQRVLGIAIVLLGLGLPLDAVLTVGRETAVVLLGTLVAGAVAALVVGRLLALHRE CCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGILIAAGTTICGASAIAAVTAVIKPSRDRVAYALGTIFVFNILAVLVYPPLGHALGLSE CCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC EAFGLWAGTAINDTSSVLAAGVAFGPVAASFAVIVKLVRSLMIVPLCVGLHLAGRRGAVR HHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH EAAEPTPLWRTIPLFVVLFLAASVVAGLGVLPSAWTAGLTHLSGWLVAAVLAAVGAGLDW HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH RRLAATGPRPLVYGGILGLVLAGSALALQAATGWL HHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCC >Mature Secondary Structure MNTLRPAVPGLLLAAVLATVATVVGRLVPVAGAPVTALAAGALTGVAARRAVADDGRFGP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC GLDLTRQRVLGIAIVLLGLGLPLDAVLTVGRETAVVLLGTLVAGAVAALVVGRLLALHRE CCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGILIAAGTTICGASAIAAVTAVIKPSRDRVAYALGTIFVFNILAVLVYPPLGHALGLSE CCEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC EAFGLWAGTAINDTSSVLAAGVAFGPVAASFAVIVKLVRSLMIVPLCVGLHLAGRRGAVR HHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH EAAEPTPLWRTIPLFVVLFLAASVVAGLGVLPSAWTAGLTHLSGWLVAAVLAAVGAGLDW HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH RRLAATGPRPLVYGGILGLVLAGSALALQAATGWL HHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12552129 [H]