Click here to switch to the map view.

The map label for this gene is scoF [H]

Identifier: 54026196

GI number: 54026196

Start: 4374731

End: 4374937

Strand: Reverse

Name: scoF [H]

Synonym: nfa42250

Alternate gene names: 54026196

Gene position: 4374937-4374731 (Counterclockwise)

Preceding gene: 54026197

Following gene: 54026195

Centisome position: 72.66

GC content: 65.22

Gene sequence:

>207_bases
ATGGCTCAAGGCATTGTGAAGTGGTTCAACAGCGAGAAGGGCTTCGGCTTCATCGCTCAGGACGGCGGCGGTCCCGACGT
CTTCGTGCACTACTCGGCGGTCAGCGGTTCCGGTTTCCGGTCGCTGGACGAGGGGCAGCGCGTGGAGTTCGAGATCGGCC
AGGGGCAGAAGGGTCCGCAGGCCCAGGATGTCCGCGTCGTCGCCTGA

Upstream 100 bases:

>100_bases
CACCCCCTGTGGAGGTGGAGGAATCCCGCGATCCGTGGCAGGGTGGATCTACGAGACCGGTGCATCGCAGTTTCCCCGGC
TCGTCAACAGAAAGTATGAA

Downstream 100 bases:

>100_bases
TACGTCGACTTGGTAGAAGCTCCGCACCGGATGGTGCGGGGCTTCTCGCGTTTTCGGGGGCCTCCGGTCTTGGTGAATCG
GGCATGGGCCGGCCGGTTCG

Product: putative cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MAQGIVKWFNSEKGFGFIAQDGGGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQKGPQAQDVRVVA

Sequences:

>Translated_68_residues
MAQGIVKWFNSEKGFGFIAQDGGGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQKGPQAQDVRVVA
>Mature_67_residues
AQGIVKWFNSEKGFGFIAQDGGGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQKGPQAQDVRVVA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=59.0163934426229, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=58.4615384615385, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=61.2903225806452, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=60, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=52.3076923076923, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=58.4615384615385, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787107, Length=61, Percent_Identity=54.0983606557377, Blast_Score=75, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71983225, Length=55, Percent_Identity=50.9090909090909, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71983217, Length=55, Percent_Identity=50.9090909090909, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=49.1803278688525, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7275; Mature: 7144

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGIVKWFNSEKGFGFIAQDGGGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQKGPQ
CCCCCEEECCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
AQDVRVVA
CCCEEEEC
>Mature Secondary Structure 
AQGIVKWFNSEKGFGFIAQDGGGPDVFVHYSAVSGSGFRSLDEGQRVEFEIGQGQKGPQ
CCCCEEECCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
AQDVRVVA
CCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]