| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026190
Identifier: 54026190
GI number: 54026190
Start: 4369457
End: 4370044
Strand: Reverse
Name: 54026190
Synonym: nfa42190
Alternate gene names: NA
Gene position: 4370044-4369457 (Counterclockwise)
Preceding gene: 54026191
Following gene: 54026188
Centisome position: 72.58
GC content: 70.41
Gene sequence:
>588_bases GTGAGTGGACGGCGGACGGGACGCGGTCCGTACACGATCGGCGACCTGCACGCGCTGCCCGAGCACGGCAAGGGCTACGA ACTCGAGGACGGCTGGTTGGTCGAAGTGCACCGCGGTGCCCGGCACAACCACGTGGTGCAGCGGATGGCCCGGCTGCTCG ATCGCAGTGCCGATCTGGCCGTGCACGTCTGCCTAGGCGGCGGATGGGAGGTCGGAACGCCCGGCGGGGTGCGCAAGCCC GACATCGTGGTGGTGCCGCGCGAGGTGATCCGCGCCGCCATCGTCGCCGACCCACCGCGCGTCATCCCCGGCACCCAGGT GCGGCTGGCGGTGGAGGTGATCGCGCCGGGCAGCGCGAGCGAGCGCACCGACCGGGTGCGCAAGGTCCGCGAGTACGCGG CGGTCGGCATCCCGGAATACTGGATCGTGGAACATCATCCGCAGGTGCGCATCCACCGGCTGGTGCTCGCGGACGGCATG TACCGGGCGAGCGCGGTGGTGGAATCCGGTTCGGTGCTGACCGCGGATATCGGCTCGGACAACGGGTTTCGCGTCAGTGT CGATCCCGGCGACCTGCTCGAAGTCTGA
Upstream 100 bases:
>100_bases GGATGCGGGGCCCGTCCTGTCTCGTTCGGGCGGCGCCCAGGTGGGTATCCCGAACGCACGGTATCGCCGAAGGTTCGGCG CGATACGGCAGGAGGATCTG
Downstream 100 bases:
>100_bases CGCCTGCGGCGGAGCCGTTCTCGCGGTGGCCCTTCGGGTCGGCGGGTACCAGGGGAACCGCCATCGCGGCGACGGCCGCG GTGACCAGGTAGGCCGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MSGRRTGRGPYTIGDLHALPEHGKGYELEDGWLVEVHRGARHNHVVQRMARLLDRSADLAVHVCLGGGWEVGTPGGVRKP DIVVVPREVIRAAIVADPPRVIPGTQVRLAVEVIAPGSASERTDRVRKVREYAAVGIPEYWIVEHHPQVRIHRLVLADGM YRASAVVESGSVLTADIGSDNGFRVSVDPGDLLEV
Sequences:
>Translated_195_residues MSGRRTGRGPYTIGDLHALPEHGKGYELEDGWLVEVHRGARHNHVVQRMARLLDRSADLAVHVCLGGGWEVGTPGGVRKP DIVVVPREVIRAAIVADPPRVIPGTQVRLAVEVIAPGSASERTDRVRKVREYAAVGIPEYWIVEHHPQVRIHRLVLADGM YRASAVVESGSVLTADIGSDNGFRVSVDPGDLLEV >Mature_194_residues SGRRTGRGPYTIGDLHALPEHGKGYELEDGWLVEVHRGARHNHVVQRMARLLDRSADLAVHVCLGGGWEVGTPGGVRKPD IVVVPREVIRAAIVADPPRVIPGTQVRLAVEVIAPGSASERTDRVRKVREYAAVGIPEYWIVEHHPQVRIHRLVLADGMY RASAVVESGSVLTADIGSDNGFRVSVDPGDLLEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21218; Mature: 21086
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGRRTGRGPYTIGDLHALPEHGKGYELEDGWLVEVHRGARHNHVVQRMARLLDRSADLA CCCCCCCCCCCEECHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEE VHVCLGGGWEVGTPGGVRKPDIVVVPREVIRAAIVADPPRVIPGTQVRLAVEVIAPGSAS EEEEECCCEECCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCH ERTDRVRKVREYAAVGIPEYWIVEHHPQVRIHRLVLADGMYRASAVVESGSVLTADIGSD HHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEECCCCHHHHHEEECCCEEEEECCCC NGFRVSVDPGDLLEV CCEEEEECCCHHCCC >Mature Secondary Structure SGRRTGRGPYTIGDLHALPEHGKGYELEDGWLVEVHRGARHNHVVQRMARLLDRSADLA CCCCCCCCCCEECHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEE VHVCLGGGWEVGTPGGVRKPDIVVVPREVIRAAIVADPPRVIPGTQVRLAVEVIAPGSAS EEEEECCCEECCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCH ERTDRVRKVREYAAVGIPEYWIVEHHPQVRIHRLVLADGMYRASAVVESGSVLTADIGSD HHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEECCCCHHHHHEEECCCEEEEECCCC NGFRVSVDPGDLLEV CCEEEEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA