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The map label for this gene is rsmD [H]

Identifier: 54026161

GI number: 54026161

Start: 4336683

End: 4337249

Strand: Reverse

Name: rsmD [H]

Synonym: nfa41900

Alternate gene names: 54026161

Gene position: 4337249-4336683 (Counterclockwise)

Preceding gene: 54026162

Following gene: 54026160

Centisome position: 72.03

GC content: 77.07

Gene sequence:

>567_bases
ATGCCGCGCATCGTCGCGGGCACCGCGGGCGGGCGCAGGCTGCGCGTCCCGCCCGCGGGCACCCGGCCCACCTCCGACCG
GGTGCGCGAGGCGCTGTTCAGCGCGCTCGCCGCCCGGATGGATTTCGCCGGCGCGCGGGTGCTGGACCTGTACGCGGGTT
CCGGGGCGCTGGCGCTGGAGGCGCTCTCGCGTGGCGCGGCCCGTGCCCTGCTGGTCGAATCCGACCGGCGAGCGGCGCAG
GTGGTGCGGGCCAACATCGCCGAACTCGGGCTGTCCGGCGCCGAACTGCGCGTCGGGTCGGTGGGCGCGGTGCTCGAGCA
GGGCGGCGCGGGGGAGTTCGACCTGGTCTTCGCCGATCCGCCCTACGAGCTCGACACCGCGGCGGTGGCGGCGGACGTGG
CGCTGCTCGCCGCCCGCGGCTGGCTCGCCGACGGCGCCCTGGTGGTGCTCGAGCGCTCGGCGCGCAGCGCGGAAATCGAC
TGGCCCGCAGCGTTTCTGCCCGGCGCAGCGCGACGGTACGGCGAGACGCGGCTGGAACTGGCCGAGTACGCGCCCGGAGC
GGACTGA

Upstream 100 bases:

>100_bases
CCCGCGCGGGCACCGTCGCCCGGGTCGCCATCGGCAAGGTGCAGCAGGTCGAGGGCGGTGACCTGCTGGTGGAACTGCGG
CTGCGCGAGTCCGCGGACTG

Downstream 100 bases:

>100_bases
GCGGCGCGGCGGGGCGGGCGCGGGCCTGATAGCGTCGGCCCATGGCTGGAGCACTGTGCCCCGGGTCCTTCGATCCGGTG
ACGAACGGACATCTCGACGT

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m2G966 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase [H]

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MPRIVAGTAGGRRLRVPPAGTRPTSDRVREALFSALAARMDFAGARVLDLYAGSGALALEALSRGAARALLVESDRRAAQ
VVRANIAELGLSGAELRVGSVGAVLEQGGAGEFDLVFADPPYELDTAAVAADVALLAARGWLADGALVVLERSARSAEID
WPAAFLPGAARRYGETRLELAEYAPGAD

Sequences:

>Translated_188_residues
MPRIVAGTAGGRRLRVPPAGTRPTSDRVREALFSALAARMDFAGARVLDLYAGSGALALEALSRGAARALLVESDRRAAQ
VVRANIAELGLSGAELRVGSVGAVLEQGGAGEFDLVFADPPYELDTAAVAADVALLAARGWLADGALVVLERSARSAEID
WPAAFLPGAARRYGETRLELAEYAPGAD
>Mature_187_residues
PRIVAGTAGGRRLRVPPAGTRPTSDRVREALFSALAARMDFAGARVLDLYAGSGALALEALSRGAARALLVESDRRAAQV
VRANIAELGLSGAELRVGSVGAVLEQGGAGEFDLVFADPPYELDTAAVAADVALLAARGWLADGALVVLERSARSAEIDW
PAAFLPGAARRYGETRLELAEYAPGAD

Specific function: Specifically methylates the guanosine in position 966 of 16S rRNA in the assembled 30S particle [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=150, Percent_Identity=44, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: =2.1.1.171 [H]

Molecular weight: Translated: 19468; Mature: 19337

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRIVAGTAGGRRLRVPPAGTRPTSDRVREALFSALAARMDFAGARVLDLYAGSGALALE
CCEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
ALSRGAARALLVESDRRAAQVVRANIAELGLSGAELRVGSVGAVLEQGGAGEFDLVFADP
HHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCEEEEECCC
PYELDTAAVAADVALLAARGWLADGALVVLERSARSAEIDWPAAFLPGAARRYGETRLEL
CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHHHHCHHHHHH
AEYAPGAD
HHCCCCCC
>Mature Secondary Structure 
PRIVAGTAGGRRLRVPPAGTRPTSDRVREALFSALAARMDFAGARVLDLYAGSGALALE
CEEEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
ALSRGAARALLVESDRRAAQVVRANIAELGLSGAELRVGSVGAVLEQGGAGEFDLVFADP
HHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCCCCEEEEECCC
PYELDTAAVAADVALLAARGWLADGALVVLERSARSAEIDWPAAFLPGAARRYGETRLEL
CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHHHHCHHHHHH
AEYAPGAD
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]