| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is glnD [H]
Identifier: 54026133
GI number: 54026133
Start: 4308751
End: 4311204
Strand: Reverse
Name: glnD [H]
Synonym: nfa41620
Alternate gene names: 54026133
Gene position: 4311204-4308751 (Counterclockwise)
Preceding gene: 54026134
Following gene: 54026132
Centisome position: 71.6
GC content: 73.27
Gene sequence:
>2454_bases ATGAAACGGGTGGTGGTCGTGGGTAGTGGTAGCAGGCGGACCGACAGCGGACCGGCCAAGGCCGGTGGTGCCGCCGATCT GGTGCGGGCGCGGGCGCAGTTGCTCGAGGGTGGGCTGCCGCGCAATCCACGGCTGGACGCGGCATCGCTGCGGCAGGCGC TGGTGGACCTGTACGAGCTGTGGCTCACCGGCAAGGGCGCCGAGCTGGGCATCACCGCCGACAGCGGCCTGGCCGTGGTG GCCGTCGGCGGGCTCGGGCGCAAGGAGATGCTGCCGTACTCCGACCTGGATCTGGTGCTGTTGCACGACGAGGTCGATCC CGCGCGGGTCGCCGAGGTCGCCGATCAGCTCTGGTATCCGTTGTGGGACGCCCACATCAAGCTCGACCACAGCGTCCGCA CCGTGCCGCAGGCGCTGCGGGTGGCCGGTGACGACCTGATCGCCGCGCTCGGCATGCTCGAAGCCCGCCACATCGTCGGC GATGTGGAGCTGAGCAATCTGCTGATCGGCGGGGTGCGCCGGGAGTGGCGCAACGGGATCCGGCATCGGTTCGACGACCT GGTCGCCCAGGCCGAGGCCCGCTGGCAGCGCTGCGGCGAGATCGCCCACCGGGCCGAGCCCGACCTGAAGAACGGCCGCG GCGGACTGCGCGACATCCAGCTGCTCGACGCACTCGCCGTCGCACACCTGACCGACGCCATGCCGGGGCTCGGTCCGGAG GTGCCCGGCGGCGGACTGCGGCAGGCGCACCGCCGGTTGCTCGACGTCCGTACCGAGCTGCACCGGGTCGCCGGCCGCGG CCGCGACCAGTTGCGGGCGCAGGACGCCGACGAGATCGGCGCGGCGCTGCGCATCGGCGACCGCTTCGATCTGGCTCGCA CACTGAGTGATTCGGCCCGGACGGTGAGCTACTCCGTCGAGGTCGGATTGCGCACGGCCGCCAACGCGCTGCCGCGGCGC GGGCTGGCCAGGCTGCGCCGCATGCCGGTGCGTCGACCACTCGATGAGGGGGTGGTCGAGCACGCGGGCGAGGTGGTGCT GGCCAGGGACGCGCGGCCGCAGCGCGATCCCGGGCTGATCCTGCGGGTGGCGGCGGCGTCGGCGCAGACCGGGCTGCCGA TGTCGGCCACCACACTCAACCGGCTCTCCGAGGACGCGCCGGAACTGCGGGAGCCGTGGCCCAAGGACGCGCTCAACGAC CTGCTGGTGCTGCTGGGCGCGGGCCGGGGCGTGATCGCGGCGATCGAGGCGCTGGACCGGACCGGGTTGTGGGGCAGACT GCTGCCGGAGTGGGGCGCGGTACGCGATCTGCCGCCCCGCGATGTCCTGCACACCTGGACGGTCGATCGCCACCTGATGG AAACCGTCGCCTACGCGAGCGCGCTGAGTACCCGGGTGGCCCGGCCCGATCTGCTCGCACTGGGCGCGCTGCTGCACGAC ATCGGCAAGGGCAGGCAGGGCGATCACAGCCTGGTCGGGGCGGAGCTGGCGACGCAGATCGGGCGCAGGCTCGGACTGTG GCCCTCCGACGTGCGGACGTTGAGTGCGATCGTGCGCCACCACCTGCTGCTGCCGGACACCGCGACCCGGCGCGATCTGG ACGATCCGCAGACCGTGCGGCACGTCGTGGAGGCGCTCGACGGCGATCCGCAACTGCTGGAGCTGCTGCACACGCTGGCC GAGGCCGATTCGCTGGCCACCGGACCGGGGGTGTGGGGCGAGTGGAAGGCTTCGCTGATCGGGGATCTGGTCCGCCGCTG CCGGGCGGTGATGGCCGGTGACGCGCTGCCGACGCCCGCCCCGATCGCGCCGGAGTTGCTCGCCAAGGCCGCGGCGGGCG GTGTGCACGTCGAGTTGGCGCCGGGGGAGGGCAAGTTCAGCCACGTCGTCACGGTCATCGCGCCGGACGCGCCCGGTCTG CTCTCCGATGCCGCGGGTGTGCTCGCCCTGCACTCGCTGCGGGTGCTGTCGGCGTCGCTGGGCGTGCACGGCGACTCGGC CGTCGACACCTTCGTCGTCACACCGAAATTCGGCGATCCGCCCGACCCGGGCCTGCTGCGCCAGGAACTGATCCGGGCCA TCGCCGGCGACCTCGATCTGCCCGCGGTGCTCGCCGAGCGGGAGCGGGCCGCGGTCGGCGCCGGTCGCGGTCCCTATGCC CAGGCGCAGCCGCGGCTGTTGTGGACGCCCACCGGCACGCCGGGGCAGGTGATCCTGGAACTGCGCGCCGAGGACCGGAT CGGTCTGCTGAGCAGGCTCGCCGCCGCGTTCGCCGACTGCGGGGCCAATGTCCGCTGGGCCAAGATCGTCACCATGGGCG CGGCCGTCGTCGACGCCTTCTGCCTGGAGCTGGGCGGTCCGGACGAGCAGGCCCAGCGTGCCGCGCTCACCGACGCGGTG CTGCGGGTGGTGCCGCAGCCCGCCCCGAAGCCGCCGGAGGAGACCCCGGCCTAG
Upstream 100 bases:
>100_bases GCGCACCGGCGAGCGCGGCACCGACGCGCTGTAGCGGGATTTCGAGTCGAGCGGCGGCCCCGCTCCCACCGGACAGCCCG GTCGGGGCGGGGCCGCACTC
Downstream 100 bases:
>100_bases CGTGTCGCCGGGCCGCGACCGGAATGTTGCAGACCATTTGCTGGAACGCCTCCTCGGTTCCCGCGCGGCCCCTACGATCA TCAAGGTCCGGCTGTCGCGA
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MKRVVVVGSGSRRTDSGPAKAGGAADLVRARAQLLEGGLPRNPRLDAASLRQALVDLYELWLTGKGAELGITADSGLAVV AVGGLGRKEMLPYSDLDLVLLHDEVDPARVAEVADQLWYPLWDAHIKLDHSVRTVPQALRVAGDDLIAALGMLEARHIVG DVELSNLLIGGVRREWRNGIRHRFDDLVAQAEARWQRCGEIAHRAEPDLKNGRGGLRDIQLLDALAVAHLTDAMPGLGPE VPGGGLRQAHRRLLDVRTELHRVAGRGRDQLRAQDADEIGAALRIGDRFDLARTLSDSARTVSYSVEVGLRTAANALPRR GLARLRRMPVRRPLDEGVVEHAGEVVLARDARPQRDPGLILRVAAASAQTGLPMSATTLNRLSEDAPELREPWPKDALND LLVLLGAGRGVIAAIEALDRTGLWGRLLPEWGAVRDLPPRDVLHTWTVDRHLMETVAYASALSTRVARPDLLALGALLHD IGKGRQGDHSLVGAELATQIGRRLGLWPSDVRTLSAIVRHHLLLPDTATRRDLDDPQTVRHVVEALDGDPQLLELLHTLA EADSLATGPGVWGEWKASLIGDLVRRCRAVMAGDALPTPAPIAPELLAKAAAGGVHVELAPGEGKFSHVVTVIAPDAPGL LSDAAGVLALHSLRVLSASLGVHGDSAVDTFVVTPKFGDPPDPGLLRQELIRAIAGDLDLPAVLAERERAAVGAGRGPYA QAQPRLLWTPTGTPGQVILELRAEDRIGLLSRLAAAFADCGANVRWAKIVTMGAAVVDAFCLELGGPDEQAQRAALTDAV LRVVPQPAPKPPEETPA
Sequences:
>Translated_817_residues MKRVVVVGSGSRRTDSGPAKAGGAADLVRARAQLLEGGLPRNPRLDAASLRQALVDLYELWLTGKGAELGITADSGLAVV AVGGLGRKEMLPYSDLDLVLLHDEVDPARVAEVADQLWYPLWDAHIKLDHSVRTVPQALRVAGDDLIAALGMLEARHIVG DVELSNLLIGGVRREWRNGIRHRFDDLVAQAEARWQRCGEIAHRAEPDLKNGRGGLRDIQLLDALAVAHLTDAMPGLGPE VPGGGLRQAHRRLLDVRTELHRVAGRGRDQLRAQDADEIGAALRIGDRFDLARTLSDSARTVSYSVEVGLRTAANALPRR GLARLRRMPVRRPLDEGVVEHAGEVVLARDARPQRDPGLILRVAAASAQTGLPMSATTLNRLSEDAPELREPWPKDALND LLVLLGAGRGVIAAIEALDRTGLWGRLLPEWGAVRDLPPRDVLHTWTVDRHLMETVAYASALSTRVARPDLLALGALLHD IGKGRQGDHSLVGAELATQIGRRLGLWPSDVRTLSAIVRHHLLLPDTATRRDLDDPQTVRHVVEALDGDPQLLELLHTLA EADSLATGPGVWGEWKASLIGDLVRRCRAVMAGDALPTPAPIAPELLAKAAAGGVHVELAPGEGKFSHVVTVIAPDAPGL LSDAAGVLALHSLRVLSASLGVHGDSAVDTFVVTPKFGDPPDPGLLRQELIRAIAGDLDLPAVLAERERAAVGAGRGPYA QAQPRLLWTPTGTPGQVILELRAEDRIGLLSRLAAAFADCGANVRWAKIVTMGAAVVDAFCLELGGPDEQAQRAALTDAV LRVVPQPAPKPPEETPA >Mature_817_residues MKRVVVVGSGSRRTDSGPAKAGGAADLVRARAQLLEGGLPRNPRLDAASLRQALVDLYELWLTGKGAELGITADSGLAVV AVGGLGRKEMLPYSDLDLVLLHDEVDPARVAEVADQLWYPLWDAHIKLDHSVRTVPQALRVAGDDLIAALGMLEARHIVG DVELSNLLIGGVRREWRNGIRHRFDDLVAQAEARWQRCGEIAHRAEPDLKNGRGGLRDIQLLDALAVAHLTDAMPGLGPE VPGGGLRQAHRRLLDVRTELHRVAGRGRDQLRAQDADEIGAALRIGDRFDLARTLSDSARTVSYSVEVGLRTAANALPRR GLARLRRMPVRRPLDEGVVEHAGEVVLARDARPQRDPGLILRVAAASAQTGLPMSATTLNRLSEDAPELREPWPKDALND LLVLLGAGRGVIAAIEALDRTGLWGRLLPEWGAVRDLPPRDVLHTWTVDRHLMETVAYASALSTRVARPDLLALGALLHD IGKGRQGDHSLVGAELATQIGRRLGLWPSDVRTLSAIVRHHLLLPDTATRRDLDDPQTVRHVVEALDGDPQLLELLHTLA EADSLATGPGVWGEWKASLIGDLVRRCRAVMAGDALPTPAPIAPELLAKAAAGGVHVELAPGEGKFSHVVTVIAPDAPGL LSDAAGVLALHSLRVLSASLGVHGDSAVDTFVVTPKFGDPPDPGLLRQELIRAIAGDLDLPAVLAERERAAVGAGRGPYA QAQPRLLWTPTGTPGQVILELRAEDRIGLLSRLAAAFADCGANVRWAKIVTMGAAVVDAFCLELGGPDEQAQRAALTDAV LRVVPQPAPKPPEETPA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=839, Percent_Identity=26.9368295589988, Blast_Score=211, Evalue=2e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 87268; Mature: 87268
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRVVVVGSGSRRTDSGPAKAGGAADLVRARAQLLEGGLPRNPRLDAASLRQALVDLYEL CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH WLTGKGAELGITADSGLAVVAVGGLGRKEMLPYSDLDLVLLHDEVDPARVAEVADQLWYP HHCCCCCEEEEECCCCEEEEEECCCCHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH LWDAHIKLDHSVRTVPQALRVAGDDLIAALGMLEARHIVGDVELSNLLIGGVRREWRNGI HHHCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH RHRFDDLVAQAEARWQRCGEIAHRAEPDLKNGRGGLRDIQLLDALAVAHLTDAMPGLGPE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC VPGGGLRQAHRRLLDVRTELHRVAGRGRDQLRAQDADEIGAALRIGDRFDLARTLSDSAR CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCC TVSYSVEVGLRTAANALPRRGLARLRRMPVRRPLDEGVVEHAGEVVLARDARPQRDPGLI EEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCEE LRVAAASAQTGLPMSATTLNRLSEDAPELREPWPKDALNDLLVLLGAGRGVIAAIEALDR EEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH TGLWGRLLPEWGAVRDLPPRDVLHTWTVDRHLMETVAYASALSTRVARPDLLALGALLHD CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH IGKGRQGDHSLVGAELATQIGRRLGLWPSDVRTLSAIVRHHLLLPDTATRRDLDDPQTVR HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH HVVEALDGDPQLLELLHTLAEADSLATGPGVWGEWKASLIGDLVRRCRAVMAGDALPTPA HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PIAPELLAKAAAGGVHVELAPGEGKFSHVVTVIAPDAPGLLSDAAGVLALHSLRVLSASL CCCHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH GVHGDSAVDTFVVTPKFGDPPDPGLLRQELIRAIAGDLDLPAVLAERERAAVGAGRGPYA CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC QAQPRLLWTPTGTPGQVILELRAEDRIGLLSRLAAAFADCGANVRWAKIVTMGAAVVDAF CCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH CLELGGPDEQAQRAALTDAVLRVVPQPAPKPPEETPA HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MKRVVVVGSGSRRTDSGPAKAGGAADLVRARAQLLEGGLPRNPRLDAASLRQALVDLYEL CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH WLTGKGAELGITADSGLAVVAVGGLGRKEMLPYSDLDLVLLHDEVDPARVAEVADQLWYP HHCCCCCEEEEECCCCEEEEEECCCCHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH LWDAHIKLDHSVRTVPQALRVAGDDLIAALGMLEARHIVGDVELSNLLIGGVRREWRNGI HHHCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH RHRFDDLVAQAEARWQRCGEIAHRAEPDLKNGRGGLRDIQLLDALAVAHLTDAMPGLGPE HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC VPGGGLRQAHRRLLDVRTELHRVAGRGRDQLRAQDADEIGAALRIGDRFDLARTLSDSAR CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCC TVSYSVEVGLRTAANALPRRGLARLRRMPVRRPLDEGVVEHAGEVVLARDARPQRDPGLI EEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCEE LRVAAASAQTGLPMSATTLNRLSEDAPELREPWPKDALNDLLVLLGAGRGVIAAIEALDR EEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH TGLWGRLLPEWGAVRDLPPRDVLHTWTVDRHLMETVAYASALSTRVARPDLLALGALLHD CCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH IGKGRQGDHSLVGAELATQIGRRLGLWPSDVRTLSAIVRHHLLLPDTATRRDLDDPQTVR HCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH HVVEALDGDPQLLELLHTLAEADSLATGPGVWGEWKASLIGDLVRRCRAVMAGDALPTPA HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PIAPELLAKAAAGGVHVELAPGEGKFSHVVTVIAPDAPGLLSDAAGVLALHSLRVLSASL CCCHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH GVHGDSAVDTFVVTPKFGDPPDPGLLRQELIRAIAGDLDLPAVLAERERAAVGAGRGPYA CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC QAQPRLLWTPTGTPGQVILELRAEDRIGLLSRLAAAFADCGANVRWAKIVTMGAAVVDAF CCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH CLELGGPDEQAQRAALTDAVLRVVPQPAPKPPEETPA HHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA