Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

Click here to switch to the map view.

The map label for this gene is 54026130

Identifier: 54026130

GI number: 54026130

Start: 4305448

End: 4306461

Strand: Reverse

Name: 54026130

Synonym: nfa41590

Alternate gene names: NA

Gene position: 4306461-4305448 (Counterclockwise)

Preceding gene: 54026131

Following gene: 54026129

Centisome position: 71.52

GC content: 72.09

Gene sequence:

>1014_bases
ATGCGGGATGCCGAAACCCTCTGTGACAGCGGCTGGATCGTGCCGGGCCTGGTCGACGCGCACTGCCACGTCGGCATTCG
CTACGGCGGTGGCGACGAGGACCACGACGGCGCGATCGCCCAGGCCGAGATCGAACGCGACGCCGGTGCGCTGCTGCTGC
GCGACGCGGGCTCGCCCATCGATACGCGCTTCATCGACGACCACGACGACCTACCCCGCATCATCCGTGCGGGCAGGCAC
ATCGCGCGGCCCAAACGCTACATCCGCGAGCTGGGGATCGAGCTCGACGACGAACGGGACCTGCCGCAGATCGTGGCCGA
GCAGGCCCGCCGCGGCGACGGCTGGGTCAAGATCGTCGGCGACTGGATCGACCGCGCCGTCGGCGATCTGCGCCCGCTGT
GGAGCGATGCCGTCCTGGTCGAGGCGATCGAGGCCGCGCACGCCGAGGGCGCTCGGGTGACCGCGCACGTCTTCGGCGAG
GACGCGCTGCCCGGGTTGATCAACGCCGGTATCGACTGTCTCGAGCACGGCACCGGCCTCACCGACGACACCATCGCGAT
GATGGTCGAGCACGGCACCGCCCTGGTGCCCACCCTGATCAACATCGACACCTTCCCCGAGATCGCCGACAGCGCGGGCC
GCTTCCCCGTCTACGCCGCACACATGCGCGACCTGCACCGTCGCGTGCGCGACACCATCGGCAACGCCCACGACGCCGGC
GTGCCGATCTACGCGGGCACCGACGCGGGCGGCTCGATCCGGCACGGCCGCATCGCCGACGAGATCGCCGCGCTCGGCAA
GGCCGGGCTGTCGGCGCACGAGGCGCTCGGCGCGGCGTCCTGGGCGGCCCGCGACTGGCTCGGCAGGCCGGGCATCGCGC
ACGGGGCGCCCGCCGATTTCGTCGTCTACCGCGACGATCCGCGCGAGCATCCCGATGTGCTCACCGAGCCCGCCTGGGTG
GTGCTGCGCGGGCGGGTGGTCAAGTCCGCCGATCCCGTCACCGGACACCGGTGA

Upstream 100 bases:

>100_bases
GAGTGAGGGAGGTCCCGCCGTGCATCTTCGTGGATTCGTTCTGCCCGACGACGAGGTTCGTGACCTGTGGGTACACGACG
GCCTGGTCTCGTTCGAGCCG

Downstream 100 bases:

>100_bases
CCGGCGCGTCGACGAGGTTCCGGCGGAGGCGGGCGGGCGTCGACGGTCCGCCTTCCCCGCGTGGGGGTAGCACCGATCCG
AGGAGGAGGTCGCTGTGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPIDTRFIDDHDDLPRIIRAGRH
IARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVGDWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGE
DALPGLINAGIDCLEHGTGLTDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG
VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADFVVYRDDPREHPDVLTEPAWV
VLRGRVVKSADPVTGHR

Sequences:

>Translated_337_residues
MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPIDTRFIDDHDDLPRIIRAGRH
IARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVGDWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGE
DALPGLINAGIDCLEHGTGLTDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG
VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADFVVYRDDPREHPDVLTEPAWV
VLRGRVVKSADPVTGHR
>Mature_337_residues
MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPIDTRFIDDHDDLPRIIRAGRH
IARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVGDWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGE
DALPGLINAGIDCLEHGTGLTDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG
VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADFVVYRDDPREHPDVLTEPAWV
VLRGRVVKSADPVTGHR

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To S.coelicolor SCO1861 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006680 [H]

Pfam domain/function: PF01979 Amidohydro_1 [H]

EC number: NA

Molecular weight: Translated: 36324; Mature: 36324

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPI
CCCHHHHHCCCCCCCCEECCCEEEEEEECCCCCCCCCCEEHHHHHCCCCEEEEECCCCCC
DTRFIDDHDDLPRIIRAGRHIARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVG
CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEHH
DWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGEDALPGLINAGIDCLEHGTGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
TDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG
CHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADF
CCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
VVYRDDPREHPDVLTEPAWVVLRGRVVKSADPVTGHR
EEECCCCCCCCCCCCCCCEEEEECEEECCCCCCCCCC
>Mature Secondary Structure
MRDAETLCDSGWIVPGLVDAHCHVGIRYGGGDEDHDGAIAQAEIERDAGALLLRDAGSPI
CCCHHHHHCCCCCCCCEECCCEEEEEEECCCCCCCCCCEEHHHHHCCCCEEEEECCCCCC
DTRFIDDHDDLPRIIRAGRHIARPKRYIRELGIELDDERDLPQIVAEQARRGDGWVKIVG
CCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEHH
DWIDRAVGDLRPLWSDAVLVEAIEAAHAEGARVTAHVFGEDALPGLINAGIDCLEHGTGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC
TDDTIAMMVEHGTALVPTLINIDTFPEIADSAGRFPVYAAHMRDLHRRVRDTIGNAHDAG
CHHHHHHHHHCCCCHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
VPIYAGTDAGGSIRHGRIADEIAALGKAGLSAHEALGAASWAARDWLGRPGIAHGAPADF
CCEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
VVYRDDPREHPDVLTEPAWVVLRGRVVKSADPVTGHR
EEECCCCCCCCCCCCCCCEEEEECEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]