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The map label for this gene is rimM

Identifier: 54026126

GI number: 54026126

Start: 4303362

End: 4303886

Strand: Reverse

Name: rimM

Synonym: nfa41550

Alternate gene names: 54026126

Gene position: 4303886-4303362 (Counterclockwise)

Preceding gene: 54026127

Following gene: 54026125

Centisome position: 71.48

GC content: 70.29

Gene sequence:

>525_bases
ATGGAACTCGTCGTGGGACGGGTCGCCAAATCGCACGGGGTGCGCGGAGAACTCGTCGTCGAGGTCCGCACCGACGACCC
CGACGCGCGCTTCGCCGAGGGCACCGTCCTGCGCGGGCGGCTGCCGCGCTCGACCGAGGTGCGGGAATTCACCGTGGAGT
CGGCCCGGGAACACTCGGGCCGGCTTCTGGTGTCCCTGGCCGGGGTCGACGACCGGTCCGCCGCCGACGCGCTGCGCGGC
ACGTTGTTCGTCGTCGACAGCGCCGAACTGCCGCCCTCGGACGATCCGGACGAGTTCTACGATCACGAACTCGAGGGCCT
GAGTGTGCGCGACACGGCCGGCGCCGTGCTCGGTACCGTCACCGAAGTGCTGCATTCGGCCGCCGGTGAACTGCTCTCGA
TGCGAGCCGCCGAGGACGGGCGGGAGATCCTGATCCCGTTCGTCACCGCCATCGTGCCGACCGTCTCGGTCGCCGAGGGG
TACGTCGTGATCGATCCGCCCGAGGGCCTGCTCGATCCGGAATGA

Upstream 100 bases:

>100_bases
TCGCACCGCGACCGCGCTGCGCACCCTGGTCGCGGGCATCGGCGGCCGGGGCATCCGGGTCGACGTGGTCGACACCGACC
AGTAGCCGGAGACGCCGCCG

Downstream 100 bases:

>100_bases
CACGGGCCGCATGAAACTCGACGTCGTCACCATCTTCCCCGAGTATCTGGAGCCGTTGCGCACGGCGCTGCTGGGCAAGG
CCATCGACAAGGGACTGATC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSGRLLVSLAGVDDRSAADALRG
TLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGTVTEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEG
YVVIDPPEGLLDPE

Sequences:

>Translated_174_residues
MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSGRLLVSLAGVDDRSAADALRG
TLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGTVTEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEG
YVVIDPPEGLLDPE
>Mature_174_residues
MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSGRLLVSLAGVDDRSAADALRG
TLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGTVTEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEG
YVVIDPPEGLLDPE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=150, Percent_Identity=30.6666666666667, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NOCFA (Q5YS37)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_120368.1
- ProteinModelPortal:   Q5YS37
- GeneID:   3111460
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa41550
- NMPDR:   fig|247156.1.peg.4009
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   NFAR247156:NFA41550-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18615; Mature: 18615

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSG
CCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCC
RLLVSLAGVDDRSAADALRGTLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGTV
EEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCCCHHHHHCCCCCCEECCHHHHHHHHH
TEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDPPEGLLDPE
HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEVREFTVESAREHSG
CCCCHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCC
RLLVSLAGVDDRSAADALRGTLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGTV
EEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCCCHHHHHCCCCCCEECCHHHHHHHHH
TEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDPPEGLLDPE
HHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA