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The map label for this gene is 54026127

Identifier: 54026127

GI number: 54026127

Start: 4303902

End: 4304144

Strand: Reverse

Name: 54026127

Synonym: nfa41560

Alternate gene names: NA

Gene position: 4304144-4303902 (Counterclockwise)

Preceding gene: 54026128

Following gene: 54026126

Centisome position: 71.48

GC content: 72.02

Gene sequence:

>243_bases
ATGAGCGCCGTCGTCGCCGATGCCGTCGAGCACCTCGTGCGCGGCATCGTCGCCAATCCCGATGACGTCCGCGTCGAGCT
GATCACCGGCCGTCGCGGACGCACCGTCGAGGTGCACGTGCACCCCGACGACCTGGGCAAGGTGATCGGTCGCGGTGGTC
GCACCGCGACCGCGCTGCGCACCCTGGTCGCGGGCATCGGCGGCCGGGGCATCCGGGTCGACGTGGTCGACACCGACCAG
TAG

Upstream 100 bases:

>100_bases
CCGCCGAGAACGAGCCCGTCGCCGAGGCCGTCACCCCGAAGAAGAAGGCCAAGAAGGACGACGCCGCCGCCGAGTCGACC
GAGGCCGAGGCCGCCGAGTA

Downstream 100 bases:

>100_bases
CCGGAGACGCCGCCGATGGAACTCGTCGTGGGACGGGTCGCCAAATCGCACGGGGTGCGCGGAGAACTCGTCGTCGAGGT
CCGCACCGACGACCCCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MSAVVADAVEHLVRGIVANPDDVRVELITGRRGRTVEVHVHPDDLGKVIGRGGRTATALRTLVAGIGGRGIRVDVVDTDQ

Sequences:

>Translated_80_residues
MSAVVADAVEHLVRGIVANPDDVRVELITGRRGRTVEVHVHPDDLGKVIGRGGRTATALRTLVAGIGGRGIRVDVVDTDQ
>Mature_79_residues
SAVVADAVEHLVRGIVANPDDVRVELITGRRGRTVEVHVHPDDLGKVIGRGGRTATALRTLVAGIGGRGIRVDVVDTDQ

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 8433; Mature: 8302

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVVADAVEHLVRGIVANPDDVRVELITGRRGRTVEVHVHPDDLGKVIGRGGRTATALR
CCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHCCCCCHHHHHH
TLVAGIGGRGIRVDVVDTDQ
HHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SAVVADAVEHLVRGIVANPDDVRVELITGRRGRTVEVHVHPDDLGKVIGRGGRTATALR
CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHCCCCCHHHHHH
TLVAGIGGRGIRVDVVDTDQ
HHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]