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The map label for this gene is 54026043

Identifier: 54026043

GI number: 54026043

Start: 4220501

End: 4222252

Strand: Reverse

Name: 54026043

Synonym: nfa40720

Alternate gene names: NA

Gene position: 4222252-4220501 (Counterclockwise)

Preceding gene: 54026044

Following gene: 54026040

Centisome position: 70.12

GC content: 67.87

Gene sequence:

>1752_bases
ATGACGAGCACCGACCCGCTGTTGTTCAACCCGGCCACCTACGATCCCGCGCACTTCGACGCCGAAACGCGCCGCCTGCT
GCGGGCGACGATCGAGTGGTTCGAGAACAAGGGCAAGCGGCGGCTGCTGGCCGACGACCACGCCGCGGTGTGGACCGCCG
ACTTCGTCGAGTTCGTCGCGAAGGAGAAGCTGTTCGCGACCTTCCTCACCCCGGCCGCCTACGCCGCGGGCGATCCCGAC
CGGCGCTGGGACGCCGCCCGCAACGCGGCGCTGTCGGAGATCCTCGGCTTCTACGGCCTGGCCTACTGGTATGCCGAGCA
GGTCACCATCCTCGGCCTCGGCCCGATCTGGCAGAGCGACAACGAGGCCGCCAAACAGCGCGCCGCGGCCGACCTCGCCG
ACGGTCAGGTCATGGCCTTCGCCCTGTCCGAGCAGGCACACGGCGCCGACATCTACCACACCGACCTCGTGCTCACGCCC
ACCGAACCGGGAAGCGCCGACCACGAGGCCGGCATCCTGTTCCGCGCCGACGGCACCAAGTACTACATCGGCAACGGCAA
CGTGGCGAGCATGGTCTCGGTGTTCTCCCGGCGCGGCGACGTCGAGGGCGCCGACGGATACGTGTGGTTCGTGGCCGACA
GCAGGCACGAGAACTACCAGCTGATCGACAACGTGGTGCACCAGCAGATGTATGTGAGCACCTTCCGGCTCGTGGACTAT
CCGGTGCGGGCCGAGGACATCCTGCACACCGGTCCGGAGGCGTTCTCGGCGGCGCTCAACACCGTCAACGTCGGCAAGTT
CAATCTCTGCCACGGCGGCATCGGCATGGTGGAGCACTCCTTCTACGAGGCGATCACGCACGCGCACAACCGGATCCTCT
ACGGCCGGCGCGTCACCGAGTTCCCGCATGTGCGCGGCAATTTCGTGGACGCCTACAGCCGGATCGTGGCGATGAAGCTG
TTCAGCGACCGCGCGGTGGACTACTTCCGCAGCGCGAGCCTGGACGACCGCCGCTACCTGCTGTTCAACCCGATGACCAA
GTCCAAGGTGACCTCCGAGGCCGAGGTGGTCGTCACCCTGCTGCTGGACGTGCTCGCCGCCAAGGGCTTCGAGAAGAACA
CCTACTTCGACCAGGTGCAGCGGTTGATCCGCACGCTCCCGCGGCTCGAGGGCACGGTGCACGTCAACGTCGGCCAGATC
CTGAAGTTCCTGCCCAACTACCTGTTCCACCCGGCCGAGTACCCGGAGATCGGCACCAGGCAGGACGCGGGCGACGACGC
GTTCTTCTGGCGGCAGGGGCCCGCCCGCGGCGCGGGCAAGGTGCGGTTCGCCGACTGGGTACCGGTGTATCGCGCGCACG
CCGACGTCCCCAACGTCGGGCGCTTCCTGGAGCAGGCCCTCGCGCTGCGCGAGCTGCTCGCCACCGCGGGCCCGGACGAG
AACCAGCAGGGCGACCTGGATTTCATGCTCACCATCGGCCATCTGTTCTCGCTGGTGGTCTACGGTCAGCTGATCCTGGA
ACAGGCGGCGATCACCGGGCTCGACCGCGATGTGCTCGACCAGATCTTCGACTTCCAGATCCGTGATTTCAACGCGCACG
CCACCACCCTGTACGGCAAACCCTCCGCGACCGAGACGCAGCGCGCGCAGGCGGTGGCCGCCCTGCGCACCCCGGCGACC
GACCGGGAGCGCTTCGACCGGGTGTGGGCACAGGTCGTCGGCTACGACGGCGCCTACGAGATGCGGCCCTGA

Upstream 100 bases:

>100_bases
AGGCCGGGCGAACCGGCCGTGAGAGAGTTCGGCTCCACCTACGCCACCGTAAGGTGTATCCGCTGGTCAGTCGCTATTAC
TCGCTGGTAGCTTGACCCCT

Downstream 100 bases:

>100_bases
CTCAGACGGTGCCGGGTAGCGCCGGGCTCGGGGTGCCGAGGATGGCCTGCCAGGCGGCCAGGCGCAGCGCCGCCTCGGTG
AGTGCCTCCACCCCGAGCCT

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; BCAD; SCAD [H]

Number of amino acids: Translated: 583; Mature: 582

Protein sequence:

>583_residues
MTSTDPLLFNPATYDPAHFDAETRRLLRATIEWFENKGKRRLLADDHAAVWTADFVEFVAKEKLFATFLTPAAYAAGDPD
RRWDAARNAALSEILGFYGLAYWYAEQVTILGLGPIWQSDNEAAKQRAAADLADGQVMAFALSEQAHGADIYHTDLVLTP
TEPGSADHEAGILFRADGTKYYIGNGNVASMVSVFSRRGDVEGADGYVWFVADSRHENYQLIDNVVHQQMYVSTFRLVDY
PVRAEDILHTGPEAFSAALNTVNVGKFNLCHGGIGMVEHSFYEAITHAHNRILYGRRVTEFPHVRGNFVDAYSRIVAMKL
FSDRAVDYFRSASLDDRRYLLFNPMTKSKVTSEAEVVVTLLLDVLAAKGFEKNTYFDQVQRLIRTLPRLEGTVHVNVGQI
LKFLPNYLFHPAEYPEIGTRQDAGDDAFFWRQGPARGAGKVRFADWVPVYRAHADVPNVGRFLEQALALRELLATAGPDE
NQQGDLDFMLTIGHLFSLVVYGQLILEQAAITGLDRDVLDQIFDFQIRDFNAHATTLYGKPSATETQRAQAVAALRTPAT
DRERFDRVWAQVVGYDGAYEMRP

Sequences:

>Translated_583_residues
MTSTDPLLFNPATYDPAHFDAETRRLLRATIEWFENKGKRRLLADDHAAVWTADFVEFVAKEKLFATFLTPAAYAAGDPD
RRWDAARNAALSEILGFYGLAYWYAEQVTILGLGPIWQSDNEAAKQRAAADLADGQVMAFALSEQAHGADIYHTDLVLTP
TEPGSADHEAGILFRADGTKYYIGNGNVASMVSVFSRRGDVEGADGYVWFVADSRHENYQLIDNVVHQQMYVSTFRLVDY
PVRAEDILHTGPEAFSAALNTVNVGKFNLCHGGIGMVEHSFYEAITHAHNRILYGRRVTEFPHVRGNFVDAYSRIVAMKL
FSDRAVDYFRSASLDDRRYLLFNPMTKSKVTSEAEVVVTLLLDVLAAKGFEKNTYFDQVQRLIRTLPRLEGTVHVNVGQI
LKFLPNYLFHPAEYPEIGTRQDAGDDAFFWRQGPARGAGKVRFADWVPVYRAHADVPNVGRFLEQALALRELLATAGPDE
NQQGDLDFMLTIGHLFSLVVYGQLILEQAAITGLDRDVLDQIFDFQIRDFNAHATTLYGKPSATETQRAQAVAALRTPAT
DRERFDRVWAQVVGYDGAYEMRP
>Mature_582_residues
TSTDPLLFNPATYDPAHFDAETRRLLRATIEWFENKGKRRLLADDHAAVWTADFVEFVAKEKLFATFLTPAAYAAGDPDR
RWDAARNAALSEILGFYGLAYWYAEQVTILGLGPIWQSDNEAAKQRAAADLADGQVMAFALSEQAHGADIYHTDLVLTPT
EPGSADHEAGILFRADGTKYYIGNGNVASMVSVFSRRGDVEGADGYVWFVADSRHENYQLIDNVVHQQMYVSTFRLVDYP
VRAEDILHTGPEAFSAALNTVNVGKFNLCHGGIGMVEHSFYEAITHAHNRILYGRRVTEFPHVRGNFVDAYSRIVAMKLF
SDRAVDYFRSASLDDRRYLLFNPMTKSKVTSEAEVVVTLLLDVLAAKGFEKNTYFDQVQRLIRTLPRLEGTVHVNVGQIL
KFLPNYLFHPAEYPEIGTRQDAGDDAFFWRQGPARGAGKVRFADWVPVYRAHADVPNVGRFLEQALALRELLATAGPDEN
QQGDLDFMLTIGHLFSLVVYGQLILEQAAITGLDRDVLDQIFDFQIRDFNAHATTLYGKPSATETQRAQAVAALRTPATD
RERFDRVWAQVVGYDGAYEMRP

Specific function: Has an optimum specificity for 4-carbon length fatty acyl-CoAs [H]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 65388; Mature: 65257

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTDPLLFNPATYDPAHFDAETRRLLRATIEWFENKGKRRLLADDHAAVWTADFVEFVA
CCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
KEKLFATFLTPAAYAAGDPDRRWDAARNAALSEILGFYGLAYWYAEQVTILGLGPIWQSD
HHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC
NEAAKQRAAADLADGQVMAFALSEQAHGADIYHTDLVLTPTEPGSADHEAGILFRADGTK
CHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCE
YYIGNGNVASMVSVFSRRGDVEGADGYVWFVADSRHENYQLIDNVVHQQMYVSTFRLVDY
EEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
PVRAEDILHTGPEAFSAALNTVNVGKFNLCHGGIGMVEHSFYEAITHAHNRILYGRRVTE
CCCHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
FPHVRGNFVDAYSRIVAMKLFSDRAVDYFRSASLDDRRYLLFNPMTKSKVTSEAEVVVTL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCHHHHHHHH
LLDVLAAKGFEKNTYFDQVQRLIRTLPRLEGTVHVNVGQILKFLPNYLFHPAEYPEIGTR
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCC
QDAGDDAFFWRQGPARGAGKVRFADWVPVYRAHADVPNVGRFLEQALALRELLATAGPDE
CCCCCCCEEECCCCCCCCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
NQQGDLDFMLTIGHLFSLVVYGQLILEQAAITGLDRDVLDQIFDFQIRDFNAHATTLYGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEECCCCEEEEECC
PSATETQRAQAVAALRTPATDRERFDRVWAQVVGYDGAYEMRP
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TSTDPLLFNPATYDPAHFDAETRRLLRATIEWFENKGKRRLLADDHAAVWTADFVEFVA
CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
KEKLFATFLTPAAYAAGDPDRRWDAARNAALSEILGFYGLAYWYAEQVTILGLGPIWQSD
HHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC
NEAAKQRAAADLADGQVMAFALSEQAHGADIYHTDLVLTPTEPGSADHEAGILFRADGTK
CHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCE
YYIGNGNVASMVSVFSRRGDVEGADGYVWFVADSRHENYQLIDNVVHQQMYVSTFRLVDY
EEECCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
PVRAEDILHTGPEAFSAALNTVNVGKFNLCHGGIGMVEHSFYEAITHAHNRILYGRRVTE
CCCHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCC
FPHVRGNFVDAYSRIVAMKLFSDRAVDYFRSASLDDRRYLLFNPMTKSKVTSEAEVVVTL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCHHHHHHHH
LLDVLAAKGFEKNTYFDQVQRLIRTLPRLEGTVHVNVGQILKFLPNYLFHPAEYPEIGTR
HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCC
QDAGDDAFFWRQGPARGAGKVRFADWVPVYRAHADVPNVGRFLEQALALRELLATAGPDE
CCCCCCCEEECCCCCCCCCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
NQQGDLDFMLTIGHLFSLVVYGQLILEQAAITGLDRDVLDQIFDFQIRDFNAHATTLYGK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEECCCCEEEEECC
PSATETQRAQAVAALRTPATDRERFDRVWAQVVGYDGAYEMRP
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8399220; 7857927 [H]