Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 54026040

GI number: 54026040

Start: 4218557

End: 4219210

Strand: Reverse

Name: rimP

Synonym: nfa40690

Alternate gene names: 54026040

Gene position: 4219210-4218557 (Counterclockwise)

Preceding gene: 54026043

Following gene: 54026039

Centisome position: 70.07

GC content: 72.17

Gene sequence:

>654_bases
ATGCCCATGCCGACCGAGGAAAGGGTGAGCCAGCTCGTTGCTGGTCTCGTCGAACGCCGGGGATTCGACCTCGAGGGCGT
CGAGATCACCAGGGCAGGCAGCCGCGCGGACGCGCAGCCCCGGGTCACGGTCGTCGTGGACAGCGACGGGGCAGCCGACC
TGGACGCGGTCGCCGAGCTGAGTTCGGAGATGTCGGTGGTCCTGGACGACACGGACATCTTCGGCGATTCGCCGTATCTG
CTCGAGGTCACCACCCCCGGGGTCGACCGGCCGCTCACCGCGCCGCGGCACTGGCGCCGGGCCCAGGGGCGAAAGGTGCG
GATCACCCTGCGGCCGGGGGCGGAGCCTCCCGATCCCGGCGGCTCGGCCGGCTTCGAGGCCCGTGTCGGGGTACTCGACG
GCGAGCAGATCGCCCTGGTGCTCGGCGGCAAGCGGAATCCGCACCGGGTGCGCGTGCCGCTCGCCGACATCGAGCGGGCG
GTCGTGCAGGTGGAGTTCTCCCCGCCGGGGGCCAGGGAACTGGAACTCGCGGGCGGGGTGGCGCCGGGCAGGCCGGATCC
CGGTACCGACCGGGCAATCGCCGCCGACGGGGCGATCAGCGAGGAAACATCGACAGCAGCAGCGTCCGACCCGACCGAAG
GGATCGAGGAATGA

Upstream 100 bases:

>100_bases
GCTCCAGGGCGCTGGTCCTTTACACTCTCGGGGCGCGTTACGCTAGACCTTCGGTACAGAATCTTCGACCGCGCCACAAC
TGAACCAGGAGCCGCCCCAC

Downstream 100 bases:

>100_bases
ACATCGAAATCGAAGCCCTGCGCGCGATCGTCGCCGACAAGGGGATCTCGATCGAGACGGTGATCTCCGCGATCGAGTCG
GCCCTGCTCACCGCCTACCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MPMPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQPRVTVVVDSDGAADLDAVAELSSEMSVVLDDTDIFGDSPYL
LEVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAEPPDPGGSAGFEARVGVLDGEQIALVLGGKRNPHRVRVPLADIERA
VVQVEFSPPGARELELAGGVAPGRPDPGTDRAIAADGAISEETSTAAASDPTEGIEE

Sequences:

>Translated_217_residues
MPMPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQPRVTVVVDSDGAADLDAVAELSSEMSVVLDDTDIFGDSPYL
LEVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAEPPDPGGSAGFEARVGVLDGEQIALVLGGKRNPHRVRVPLADIERA
VVQVEFSPPGARELELAGGVAPGRPDPGTDRAIAADGAISEETSTAAASDPTEGIEE
>Mature_216_residues
PMPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQPRVTVVVDSDGAADLDAVAELSSEMSVVLDDTDIFGDSPYLL
EVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAEPPDPGGSAGFEARVGVLDGEQIALVLGGKRNPHRVRVPLADIERAV
VQVEFSPPGARELELAGGVAPGRPDPGTDRAIAADGAISEETSTAAASDPTEGIEE

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=155, Percent_Identity=28.3870967741935, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_NOCFA (Q5YSC3)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_120282.1
- ProteinModelPortal:   Q5YSC3
- SMR:   Q5YSC3
- GeneID:   3109463
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa40690
- NMPDR:   fig|247156.1.peg.3928
- HOGENOM:   HBG668072
- OMA:   STTQSER
- ProtClustDB:   PRK00092
- BioCyc:   NFAR247156:NFA40690-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 22829; Mature: 22697

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQPRVTVVVDSDGAADLDAVAEL
CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHH
SSEMSVVLDDTDIFGDSPYLLEVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAEPPDPG
CCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCC
GSAGFEARVGVLDGEQIALVLGGKRNPHRVRVPLADIERAVVQVEFSPPGARELELAGGV
CCCCCEEEEEEECCCEEEEEECCCCCCCEEEEEHHHCCEEEEEEEECCCCCCEEEECCCC
APGRPDPGTDRAIAADGAISEETSTAAASDPTEGIEE
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PMPTEERVSQLVAGLVERRGFDLEGVEITRAGSRADAQPRVTVVVDSDGAADLDAVAEL
CCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHH
SSEMSVVLDDTDIFGDSPYLLEVTTPGVDRPLTAPRHWRRAQGRKVRITLRPGAEPPDPG
CCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCCC
GSAGFEARVGVLDGEQIALVLGGKRNPHRVRVPLADIERAVVQVEFSPPGARELELAGGV
CCCCCEEEEEEECCCEEEEEECCCCCCCEEEEEHHHCCEEEEEEEECCCCCCEEEECCCC
APGRPDPGTDRAIAADGAISEETSTAAASDPTEGIEE
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA