Click here to switch to the map view.

The map label for this gene is ycgR [H]

Identifier: 54026030

GI number: 54026030

Start: 4207672

End: 4208676

Strand: Reverse

Name: ycgR [H]

Synonym: nfa40600

Alternate gene names: 54026030

Gene position: 4208676-4207672 (Counterclockwise)

Preceding gene: 54026031

Following gene: 54026029

Centisome position: 69.9

GC content: 72.34

Gene sequence:

>1005_bases
ATGATGCTCGAGCAGTCGACCGTGCGCCGCGCGCGGTTCCGGGTCTCCTCCACGCACGTTCTCGCCCTGCTCGTCGTCGC
CGGGATCCTCTGGCAGGCGCCGCTGGCCACGGCGGTGGACGCGCACGTGCGCCTGCGCACCGGGTTGACGATGTTCGTCG
GGGTCTTCGTGCAGGCCGTGCCGTTCCTGGTGCTCGGCGTGCTCGTGAGCGGGCTGATCGCCGCGTTCGTGTCACCGCTG
GTGTTGCGGAAGATCCTGCCGCGCAACGAGACCGCGGCCATCGGCGTGGGCGGGCTGGCCGGAATCGCGCTGCCCGGATG
TGAATGCGGCGTGGTGCCGGTGGCGCGCAGGCTGATCGACCACGGGGCGCCGGGATCGGTGGCGCTGGCCTTCCTGCTGT
CCGCGCCCGCGATCAATCCGGTCGTGCTGGTATCGACCGCGGTCGCCTTTCCCGGTGAGCCGGGGATGGTCGGCGCCCGG
TTCGCGGGTTCGCTGGCGACCGCGCTGATGATGGGTCTGCTGTGGTCGCGCTTCGGCAGCGCGCACTGGCTGCTGCCCAC
CGCACGCGGCGCGAGCTGCGCGGTGGGGCGGACGCGCGCGGAGGTGTTCGCCGAGGCCGCCCGGCACGATTTCCTGCAGG
CCGCCGCGTTCCTCGTGCTCGGCGCGGCCACCGCCGCCGTCCTGCACGTGCTGGTGCCGCCGCACTGGTACGAGCAGCTG
GCCGGGCAGATCCTGCTCGCGATCCTGGTGCTGGCGGTGCTCGCGGTGGTGCTGGCGTTGTGTTCGGAGGCCGACGCGTT
CGTGGCGGCGAGCATGTCGTCGCTGCCGCTGCTGCCCAGGCTGGTGTTCCTCGTGGTCGGACCGGCGGTGGACGTCAAGC
TGTTCGCCATGCAGGCGGGCACCTTCGGCCGCCGGTTCGCGCTGTGGTTCTCCCCGCTGACGTTCGTGGTCGCCCTCGTC
TGCGCCACCCTGGCGGGTCTGGCGTTCCTCGGCGGTGTGCGATGA

Upstream 100 bases:

>100_bases
GCTGCGGATCGTGGCGGGGGTGACCGGCCGGTTCCGGCGCGCGGCCTGAGATCCGCGCACAGCGGTTGTCGATAACGATA
ATCATCCTTGGCAAGATGGG

Downstream 100 bases:

>100_bases
GACGGGAGACGCAGAACCTGCTGCTGGTGCTCGTCGGTATCGCGGTGTTGCGCATCGTCTTCGACGACACCTACCTGCGC
TACGTCAAGGCCGGCCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MMLEQSTVRRARFRVSSTHVLALLVVAGILWQAPLATAVDAHVRLRTGLTMFVGVFVQAVPFLVLGVLVSGLIAAFVSPL
VLRKILPRNETAAIGVGGLAGIALPGCECGVVPVARRLIDHGAPGSVALAFLLSAPAINPVVLVSTAVAFPGEPGMVGAR
FAGSLATALMMGLLWSRFGSAHWLLPTARGASCAVGRTRAEVFAEAARHDFLQAAAFLVLGAATAAVLHVLVPPHWYEQL
AGQILLAILVLAVLAVVLALCSEADAFVAASMSSLPLLPRLVFLVVGPAVDVKLFAMQAGTFGRRFALWFSPLTFVVALV
CATLAGLAFLGGVR

Sequences:

>Translated_334_residues
MMLEQSTVRRARFRVSSTHVLALLVVAGILWQAPLATAVDAHVRLRTGLTMFVGVFVQAVPFLVLGVLVSGLIAAFVSPL
VLRKILPRNETAAIGVGGLAGIALPGCECGVVPVARRLIDHGAPGSVALAFLLSAPAINPVVLVSTAVAFPGEPGMVGAR
FAGSLATALMMGLLWSRFGSAHWLLPTARGASCAVGRTRAEVFAEAARHDFLQAAAFLVLGAATAAVLHVLVPPHWYEQL
AGQILLAILVLAVLAVVLALCSEADAFVAASMSSLPLLPRLVFLVVGPAVDVKLFAMQAGTFGRRFALWFSPLTFVVALV
CATLAGLAFLGGVR
>Mature_334_residues
MMLEQSTVRRARFRVSSTHVLALLVVAGILWQAPLATAVDAHVRLRTGLTMFVGVFVQAVPFLVLGVLVSGLIAAFVSPL
VLRKILPRNETAAIGVGGLAGIALPGCECGVVPVARRLIDHGAPGSVALAFLLSAPAINPVVLVSTAVAFPGEPGMVGAR
FAGSLATALMMGLLWSRFGSAHWLLPTARGASCAVGRTRAEVFAEAARHDFLQAAAFLVLGAATAAVLHVLVPPHWYEQL
AGQILLAILVLAVLAVVLALCSEADAFVAASMSSLPLLPRLVFLVVGPAVDVKLFAMQAGTFGRRFALWFSPLTFVVALV
CATLAGLAFLGGVR

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 34692; Mature: 34692

Theoretical pI: Translated: 11.10; Mature: 11.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLEQSTVRRARFRVSSTHVLALLVVAGILWQAPLATAVDAHVRLRTGLTMFVGVFVQAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFLVLGVLVSGLIAAFVSPLVLRKILPRNETAAIGVGGLAGIALPGCECGVVPVARRLID
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHH
HGAPGSVALAFLLSAPAINPVVLVSTAVAFPGEPGMVGARFAGSLATALMMGLLWSRFGS
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
AHWLLPTARGASCAVGRTRAEVFAEAARHDFLQAAAFLVLGAATAAVLHVLVPPHWYEQL
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AGQILLAILVLAVLAVVLALCSEADAFVAASMSSLPLLPRLVFLVVGPAVDVKLFAMQAG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCC
TFGRRFALWFSPLTFVVALVCATLAGLAFLGGVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMLEQSTVRRARFRVSSTHVLALLVVAGILWQAPLATAVDAHVRLRTGLTMFVGVFVQAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFLVLGVLVSGLIAAFVSPLVLRKILPRNETAAIGVGGLAGIALPGCECGVVPVARRLID
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHH
HGAPGSVALAFLLSAPAINPVVLVSTAVAFPGEPGMVGARFAGSLATALMMGLLWSRFGS
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
AHWLLPTARGASCAVGRTRAEVFAEAARHDFLQAAAFLVLGAATAAVLHVLVPPHWYEQL
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AGQILLAILVLAVLAVVLALCSEADAFVAASMSSLPLLPRLVFLVVGPAVDVKLFAMQAG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCC
TFGRRFALWFSPLTFVVALVCATLAGLAFLGGVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]