Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is 54025722

Identifier: 54025722

GI number: 54025722

Start: 3971030

End: 3971929

Strand: Reverse

Name: 54025722

Synonym: nfa37520

Alternate gene names: NA

Gene position: 3971929-3971030 (Counterclockwise)

Preceding gene: 54025723

Following gene: 54025720

Centisome position: 65.97

GC content: 72.56

Gene sequence:

>900_bases
ATGTTCGGCAGGAAGAAGCGCGACACCAAGAGATTCGAGTCCGACGCCTACGACGAGGACTACGCGGATCAGGGGTACGA
CGAGGCTTACGACGACACCTACGGAGACGACACCTACGAAGACGACGCCTACGAAGACGACGCCTACGACGAGGTGGCCG
GGCACGGCGAGTACTCGTCCGGGCCGCTGCACGCCGCCCCCGAGCCCGAACGGCGCGGCCCCTACGACTACGACGAGGTC
GCCGAACTGCTCGCCGACGTCGCCGATCAGCGGCTCGATCTGGGGTCGGTGATCCTGCCGGTGCCGCCGGGCGGGCAGCT
CCAGGTGGAGATGACCCCCGACGGCGCGCCGCAGGCCGTGCATCTGGCCACCGAGCACGGTCGCATCACCGTGGCGGCCT
ACGCGGCGCCGAAATCGCCGGGGCAGTGGCGCACCGTCGCCGCGGACCTGGCCGATTCGCTGCGCAAGGACGGTGCCCAG
GTGTCGGTGGAGACCGGTCCGTGGGGCCGCGAGCTGCACGCGGTGACGCCGAGTGCGGATCTGCGTTTCATCGGCGTCGA
CGGCTACCGCTGGATGGTGCGCCTGGTCGCGGCGGGCCCGGCGGGCGCGGCCGCCGACGGCATGCCGCTGGTGACCGCGG
CCCGCGCGATCATGTCCGAGACCGTGGTGCGGCGCGGCAGCGATCCGCTGCCGGTGCGCGATCCGCTGCCGGTGGTGCTG
CCCCAGCAGCTGGCCGAACAGCTCGCCGCCGCCCATCAGGCGCAGATGCAGGCCCAGCAGCAGCAGATGGCCGCGCAGGC
CGCGCCACCGCCCACTCCCGCCCCGACCCCGAAGCCGGTGCCGCAGGAGCCCCGCCGTGGTGTCGGTGGGTCGGCGATGC
AGCAGCTCGGCCTGAACTGA

Upstream 100 bases:

>100_bases
TCCCGCGGCGCGGGTGGCCACGGGTCCAGCGGCGGTCATGCGAGCTTGACCCCGGGCGCGCGGAGCGCGGCCCGGGTGGC
CCAGGAGGGGTGAGACGGGA

Downstream 100 bases:

>100_bases
GCACGACCCCCACGACAGCGTCGCCGGATACCCGGCGGCGCTGTCGGCGTCTCGGCGGTGGGCGCGAAGCCGCCGACGCG
ATGGGCGGTGCGGTGTCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MFGRKKRDTKRFESDAYDEDYADQGYDEAYDDTYGDDTYEDDAYEDDAYDEVAGHGEYSSGPLHAAPEPERRGPYDYDEV
AELLADVADQRLDLGSVILPVPPGGQLQVEMTPDGAPQAVHLATEHGRITVAAYAAPKSPGQWRTVAADLADSLRKDGAQ
VSVETGPWGRELHAVTPSADLRFIGVDGYRWMVRLVAAGPAGAAADGMPLVTAARAIMSETVVRRGSDPLPVRDPLPVVL
PQQLAEQLAAAHQAQMQAQQQQMAAQAAPPPTPAPTPKPVPQEPRRGVGGSAMQQLGLN

Sequences:

>Translated_299_residues
MFGRKKRDTKRFESDAYDEDYADQGYDEAYDDTYGDDTYEDDAYEDDAYDEVAGHGEYSSGPLHAAPEPERRGPYDYDEV
AELLADVADQRLDLGSVILPVPPGGQLQVEMTPDGAPQAVHLATEHGRITVAAYAAPKSPGQWRTVAADLADSLRKDGAQ
VSVETGPWGRELHAVTPSADLRFIGVDGYRWMVRLVAAGPAGAAADGMPLVTAARAIMSETVVRRGSDPLPVRDPLPVVL
PQQLAEQLAAAHQAQMQAQQQQMAAQAAPPPTPAPTPKPVPQEPRRGVGGSAMQQLGLN
>Mature_299_residues
MFGRKKRDTKRFESDAYDEDYADQGYDEAYDDTYGDDTYEDDAYEDDAYDEVAGHGEYSSGPLHAAPEPERRGPYDYDEV
AELLADVADQRLDLGSVILPVPPGGQLQVEMTPDGAPQAVHLATEHGRITVAAYAAPKSPGQWRTVAADLADSLRKDGAQ
VSVETGPWGRELHAVTPSADLRFIGVDGYRWMVRLVAAGPAGAAADGMPLVTAARAIMSETVVRRGSDPLPVRDPLPVVL
PQQLAEQLAAAHQAQMQAQQQQMAAQAAPPPTPAPTPKPVPQEPRRGVGGSAMQQLGLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32095; Mature: 32095

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGRKKRDTKRFESDAYDEDYADQGYDEAYDDTYGDDTYEDDAYEDDAYDEVAGHGEYSS
CCCCCCCHHHHHHCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
GPLHAAPEPERRGPYDYDEVAELLADVADQRLDLGSVILPVPPGGQLQVEMTPDGAPQAV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCCEE
HLATEHGRITVAAYAAPKSPGQWRTVAADLADSLRKDGAQVSVETGPWGRELHAVTPSAD
EEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCCC
LRFIGVDGYRWMVRLVAAGPAGAAADGMPLVTAARAIMSETVVRRGSDPLPVRDPLPVVL
EEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PQQLAEQLAAAHQAQMQAQQQQMAAQAAPPPTPAPTPKPVPQEPRRGVGGSAMQQLGLN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MFGRKKRDTKRFESDAYDEDYADQGYDEAYDDTYGDDTYEDDAYEDDAYDEVAGHGEYSS
CCCCCCCHHHHHHCCCCCCHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
GPLHAAPEPERRGPYDYDEVAELLADVADQRLDLGSVILPVPPGGQLQVEMTPDGAPQAV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCCCEE
HLATEHGRITVAAYAAPKSPGQWRTVAADLADSLRKDGAQVSVETGPWGRELHAVTPSAD
EEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCCC
LRFIGVDGYRWMVRLVAAGPAGAAADGMPLVTAARAIMSETVVRRGSDPLPVRDPLPVVL
EEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PQQLAEQLAAAHQAQMQAQQQQMAAQAAPPPTPAPTPKPVPQEPRRGVGGSAMQQLGLN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA