| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025677
Identifier: 54025677
GI number: 54025677
Start: 3921283
End: 3922329
Strand: Reverse
Name: 54025677
Synonym: nfa37070
Alternate gene names: NA
Gene position: 3922329-3921283 (Counterclockwise)
Preceding gene: 54025678
Following gene: 54025676
Centisome position: 65.14
GC content: 73.07
Gene sequence:
>1047_bases ATGATCACCTTCTCCGCGACCACGGTTCTCGTCCTTGCGCTGATCGCGGCCGTCGTGCTGGCCGTCGGCGTGTGGGCCTA CTCCACGGCCAATCGGCTCGACCGGCTGCACGTGCGCTCGGACCTGTCCTGGCAGGCGCTGGAAGCCGCGCTGGCACGGC GGGCGGTGGTGGCGCGCTCGGTGGCCATGGCGATCGCCGGACCGGTCTCCGATCCCGCCCTCGCCGATCAGGCCCGCCGA CTGGCGGCCCTGGCGGACCGCGCCGAGCGTGCCGGCCGGGCCGAGCGGGAGACCGTGGAGAACCAGCTCGCCGCGGCCCT GTCGACCGTGGACATCGGATTGCTCCGCCCGCAGCTGGTCGCCGAACTCGCCGACGCGGAGGCGCGGGTGCTGATCGCGC GGCGCTTCCACAACGACGCCGTGCGCGACACGCTCGCGCTGCGCACCCGCCGCCCGGTGCGGTGGCTGCACCTGGGCGGC ACCGCCCCGTTGCCCACCTACTTCGAGATCACCGAGCGGGCCACCCCCGCCGCGTCGACCGGGCTGGCCGTCGACACCAT CCGCACCTCGTCGCGGGTGGTTCTGCTCGACGAACGCGACCGCGTGCTGCTCATGCGCGGCAACGACCCCAAGACCCCGG ACGTCTCGTTCTGGTTCACCATCGGCGGCGGCGTGGAACCGGGGGAGAGCCTGCGCGAGGCCGCGGTGCGGGAGCTGTGG GAGGAGACCGGCTACACCGCCGACCCGGCCGCGCTGCGCGGGCCGATCTGGCGGCGGGTGGCGGTGTTCCCCTTCGACGG CGAGCTGATCCGCGCCGAGGAGCTGTTCTTCACCCTGCGGGTGCCCGCGTACGAACCGAAACCGGGCAACCTCACCGCGG TCGAGCGCCGCAGCATCACCGGACACAAGTGGTGCACGTCCGCCGACATCCTCGCCCTGGACGCCGCGGGGGAGACGGTC TACCCCTACCACCTCGACGAGCTGCTGCCCGAGGCGGCCGAAGTCGCTTCCGGCACTACGGATCCCGAGGTTCGCTCGAT CCGCTGA
Upstream 100 bases:
>100_bases ACCAGGTGGTGGGCGAATACGACTGGCCGGTGGTGGCCGAGCAGATCCTGCGCGTCTACGAAACCGTGACGGTCGGCGAC ACCCGGGTACGGGCGGCCGG
Downstream 100 bases:
>100_bases CCGCGCCCTCACCGGTGTGATCCGGCTCACGAGCATGCTAGGTTCGGACTGGAATGCGGCACGGACGGGTAGCCCTCCCG AACGTGCCCGCGCAATCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Mutator MutT Protein; MutT/Nudix-Family Hydrolase; MutT Protein; MutT/NUDIX Family Hydrolase; Hydrolase Nudix Family Protein; Conserved Membrane Protein; ADP-Ribose Pyrophosphatase; MutT DNA Repair Protein; Nudix Hydrolase; Nudix Superfamily Hydrolase; Hydrolase NUDIX Family; Hydrolase NUDIX Family Protein
Number of amino acids: Translated: 348; Mature: 348
Protein sequence:
>348_residues MITFSATTVLVLALIAAVVLAVGVWAYSTANRLDRLHVRSDLSWQALEAALARRAVVARSVAMAIAGPVSDPALADQARR LAALADRAERAGRAERETVENQLAAALSTVDIGLLRPQLVAELADAEARVLIARRFHNDAVRDTLALRTRRPVRWLHLGG TAPLPTYFEITERATPAASTGLAVDTIRTSSRVVLLDERDRVLLMRGNDPKTPDVSFWFTIGGGVEPGESLREAAVRELW EETGYTADPAALRGPIWRRVAVFPFDGELIRAEELFFTLRVPAYEPKPGNLTAVERRSITGHKWCTSADILALDAAGETV YPYHLDELLPEAAEVASGTTDPEVRSIR
Sequences:
>Translated_348_residues MITFSATTVLVLALIAAVVLAVGVWAYSTANRLDRLHVRSDLSWQALEAALARRAVVARSVAMAIAGPVSDPALADQARR LAALADRAERAGRAERETVENQLAAALSTVDIGLLRPQLVAELADAEARVLIARRFHNDAVRDTLALRTRRPVRWLHLGG TAPLPTYFEITERATPAASTGLAVDTIRTSSRVVLLDERDRVLLMRGNDPKTPDVSFWFTIGGGVEPGESLREAAVRELW EETGYTADPAALRGPIWRRVAVFPFDGELIRAEELFFTLRVPAYEPKPGNLTAVERRSITGHKWCTSADILALDAAGETV YPYHLDELLPEAAEVASGTTDPEVRSIR >Mature_348_residues MITFSATTVLVLALIAAVVLAVGVWAYSTANRLDRLHVRSDLSWQALEAALARRAVVARSVAMAIAGPVSDPALADQARR LAALADRAERAGRAERETVENQLAAALSTVDIGLLRPQLVAELADAEARVLIARRFHNDAVRDTLALRTRRPVRWLHLGG TAPLPTYFEITERATPAASTGLAVDTIRTSSRVVLLDERDRVLLMRGNDPKTPDVSFWFTIGGGVEPGESLREAAVRELW EETGYTADPAALRGPIWRRVAVFPFDGELIRAEELFFTLRVPAYEPKPGNLTAVERRSITGHKWCTSADILALDAAGETV YPYHLDELLPEAAEVASGTTDPEVRSIR
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37985; Mature: 37985
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITFSATTVLVLALIAAVVLAVGVWAYSTANRLDRLHVRSDLSWQALEAALARRAVVARS CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VAMAIAGPVSDPALADQARRLAALADRAERAGRAERETVENQLAAALSTVDIGLLRPQLV HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AELADAEARVLIARRFHNDAVRDTLALRTRRPVRWLHLGGTAPLPTYFEITERATPAAST HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCC GLAVDTIRTSSRVVLLDERDRVLLMRGNDPKTPDVSFWFTIGGGVEPGESLREAAVRELW CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH EETGYTADPAALRGPIWRRVAVFPFDGELIRAEELFFTLRVPAYEPKPGNLTAVERRSIT HHCCCCCCCHHHCCCHHHEEEEECCCCCEEEHEEEEEEEECCCCCCCCCCEEEEECCCCC GHKWCTSADILALDAAGETVYPYHLDELLPEAAEVASGTTDPEVRSIR CCCCCCCCCEEEEECCCCEECCCCHHHHCHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MITFSATTVLVLALIAAVVLAVGVWAYSTANRLDRLHVRSDLSWQALEAALARRAVVARS CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VAMAIAGPVSDPALADQARRLAALADRAERAGRAERETVENQLAAALSTVDIGLLRPQLV HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AELADAEARVLIARRFHNDAVRDTLALRTRRPVRWLHLGGTAPLPTYFEITERATPAAST HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCC GLAVDTIRTSSRVVLLDERDRVLLMRGNDPKTPDVSFWFTIGGGVEPGESLREAAVRELW CCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH EETGYTADPAALRGPIWRRVAVFPFDGELIRAEELFFTLRVPAYEPKPGNLTAVERRSIT HHCCCCCCCHHHCCCHHHEEEEECCCCCEEEHEEEEEEEECCCCCCCCCCEEEEECCCCC GHKWCTSADILALDAAGETVYPYHLDELLPEAAEVASGTTDPEVRSIR CCCCCCCCCEEEEECCCCEECCCCHHHHCHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA