| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
Click here to switch to the map view.
The map label for this gene is tesB [H]
Identifier: 54025674
GI number: 54025674
Start: 3919097
End: 3919915
Strand: Reverse
Name: tesB [H]
Synonym: nfa37040
Alternate gene names: 54025674
Gene position: 3919915-3919097 (Counterclockwise)
Preceding gene: 54025675
Following gene: 54025673
Centisome position: 65.1
GC content: 68.62
Gene sequence:
>819_bases ATGGCGACCATCGAAGAGGCACTGGAGATCGAACGCCTCGAGCGGGACATCTTCCGTGGCGCGTCCACGAAGACGCAGCT GGAGCGAACGTTCGGCGGCCAGGTGGCGGGTCAGGCACTGGTGTCCGCGGTGCGCACGGTGGAACCCCGGTTCCAGGTGC ACTCGCTGCACGGCTATTTCCTGCGCCCGGGCAATCCGCAGCAGCCCACCGTGTACCTGGTGGAACGCATCCGCGACGGG CGTTCGTTCTGCACCCGCCGGGTCACCGGTGTGCAGGACGGCGCCGCCATCTTCACCATGTCGGCCTCGTTCCACATCGG TGACACCGGCCCCGCCCACCAGGACGAGATGCCCGAGGTCGCCGCGCCCGACGACCTGCCCGACGCGCAGACCTCCATGA GTCCCGAGCGGTTGTGGGCGATGCGCGAGTGGGAGCACTGGGACATCAGGATGGTCCCGCAGGAGTCTGTGGTGCGCAGG CCGGGGGTGGTCGCCCAGCAGCAGGTGTGGTTCCGCTACCGGCAGCCGCTGCCCGACGATCCGCTGTTCCACGTCTGCAC GCTGGCCTACATGAGCGACATGACGCTGCTCGGCTCGTCGAAGGTGATCCACCCCGACGAGCCGACCCAGAACGCCTCGC TCGACCACGCCATGTGGTTCCTGCGTCCGTTCCGCGCCGACGACTGGCTGCTCTACGACCAGGCCTCGCCCTCGGCGGGC TTCGGTCGCGGCCTGACCTCCGGCAAGATCTACAACCGGGCCGGTGAACTGGTCGCCGCGGTGATGCAGGAGGGCCTGAT CCGCACGTTGCGCTCGTGA
Upstream 100 bases:
>100_bases ACGTGGAGGAGATCCCGCAGCCGCACCGGCTCGCTGAGCGCGGCTGGTGATCGGGACCGGGATGAACGGGCCCGGGCATC GCACGGGCTAATCTCAGCGC
Downstream 100 bases:
>100_bases CCGGGCGTGAGCCGGGCCACAGCGCGGCCGCTCGTAAGCTGGGCCGGGTGAACCAGACCTCGGTGTCCGCACCCGCCGCC GAGCCGCAGGCGGCCCCGTC
Product: putative acyl-CoA thioesterase
Products: Hydrolyzed acyl-CoA thioesters [C]
Alternate protein names: Acyl-CoA thioesterase II; TEII [H]
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MATIEEALEIERLERDIFRGASTKTQLERTFGGQVAGQALVSAVRTVEPRFQVHSLHGYFLRPGNPQQPTVYLVERIRDG RSFCTRRVTGVQDGAAIFTMSASFHIGDTGPAHQDEMPEVAAPDDLPDAQTSMSPERLWAMREWEHWDIRMVPQESVVRR PGVVAQQQVWFRYRQPLPDDPLFHVCTLAYMSDMTLLGSSKVIHPDEPTQNASLDHAMWFLRPFRADDWLLYDQASPSAG FGRGLTSGKIYNRAGELVAAVMQEGLIRTLRS
Sequences:
>Translated_272_residues MATIEEALEIERLERDIFRGASTKTQLERTFGGQVAGQALVSAVRTVEPRFQVHSLHGYFLRPGNPQQPTVYLVERIRDG RSFCTRRVTGVQDGAAIFTMSASFHIGDTGPAHQDEMPEVAAPDDLPDAQTSMSPERLWAMREWEHWDIRMVPQESVVRR PGVVAQQQVWFRYRQPLPDDPLFHVCTLAYMSDMTLLGSSKVIHPDEPTQNASLDHAMWFLRPFRADDWLLYDQASPSAG FGRGLTSGKIYNRAGELVAAVMQEGLIRTLRS >Mature_271_residues ATIEEALEIERLERDIFRGASTKTQLERTFGGQVAGQALVSAVRTVEPRFQVHSLHGYFLRPGNPQQPTVYLVERIRDGR SFCTRRVTGVQDGAAIFTMSASFHIGDTGPAHQDEMPEVAAPDDLPDAQTSMSPERLWAMREWEHWDIRMVPQESVVRRP GVVAQQQVWFRYRQPLPDDPLFHVCTLAYMSDMTLLGSSKVIHPDEPTQNASLDHAMWFLRPFRADDWLLYDQASPSAGF GRGLTSGKIYNRAGELVAAVMQEGLIRTLRS
Specific function: Can hydrolyze a broad range of acyl-CoA thioesters. Its physiological function is not known [H]
COG id: COG1946
COG function: function code I; Acyl-CoA thioesterase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the C/M/P thioester hydrolase family [H]
Homologues:
Organism=Homo sapiens, GI34577075, Length=284, Percent_Identity=38.0281690140845, Blast_Score=175, Evalue=3e-44, Organism=Escherichia coli, GI1786657, Length=270, Percent_Identity=41.8518518518518, Blast_Score=189, Evalue=2e-49, Organism=Caenorhabditis elegans, GI17558508, Length=306, Percent_Identity=35.9477124183007, Blast_Score=175, Evalue=2e-44, Organism=Caenorhabditis elegans, GI71988741, Length=291, Percent_Identity=33.6769759450172, Blast_Score=171, Evalue=4e-43, Organism=Caenorhabditis elegans, GI17531889, Length=282, Percent_Identity=32.2695035460993, Blast_Score=132, Evalue=2e-31, Organism=Caenorhabditis elegans, GI115532456, Length=282, Percent_Identity=31.9148936170213, Blast_Score=132, Evalue=3e-31, Organism=Caenorhabditis elegans, GI17531885, Length=280, Percent_Identity=31.4285714285714, Blast_Score=131, Evalue=5e-31, Organism=Caenorhabditis elegans, GI71982224, Length=280, Percent_Identity=30.7142857142857, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI212645202, Length=266, Percent_Identity=29.6992481203008, Blast_Score=114, Evalue=4e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003703 [H]
Pfam domain/function: PF02551 Acyl_CoA_thio [H]
EC number: 3.1.2.- [C]
Molecular weight: Translated: 30697; Mature: 30566
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIEEALEIERLERDIFRGASTKTQLERTFGGQVAGQALVSAVRTVEPRFQVHSLHGYF CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEECCEEE LRPGNPQQPTVYLVERIRDGRSFCTRRVTGVQDGAAIFTMSASFHIGDTGPAHQDEMPEV ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEECCCCCCCCCCCCCCC AAPDDLPDAQTSMSPERLWAMREWEHWDIRMVPQESVVRRPGVVAQQQVWFRYRQPLPDD CCCCCCCCCHHCCCHHHHHHHHCCCCCCEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCC PLFHVCTLAYMSDMTLLGSSKVIHPDEPTQNASLDHAMWFLRPFRADDWLLYDQASPSAG HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC FGRGLTSGKIYNRAGELVAAVMQEGLIRTLRS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ATIEEALEIERLERDIFRGASTKTQLERTFGGQVAGQALVSAVRTVEPRFQVHSLHGYF CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEECCEEE LRPGNPQQPTVYLVERIRDGRSFCTRRVTGVQDGAAIFTMSASFHIGDTGPAHQDEMPEV ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECEEECCCCCCCCCCCCCCC AAPDDLPDAQTSMSPERLWAMREWEHWDIRMVPQESVVRRPGVVAQQQVWFRYRQPLPDD CCCCCCCCCHHCCCHHHHHHHHCCCCCCEEECCHHHHHHCCCCHHHHHHHHHHCCCCCCC PLFHVCTLAYMSDMTLLGSSKVIHPDEPTQNASLDHAMWFLRPFRADDWLLYDQASPSAG HHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC FGRGLTSGKIYNRAGELVAAVMQEGLIRTLRS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: acyl-CoA thioesters [C]
Specific reaction: Hydrolyzes a broad range of acyl-CoA thioesters [C]
General reaction: Hydrolase; Acting on ester bonds; Thiolester hydrolases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]