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The map label for this gene is pdxS

Identifier: 54025675

GI number: 54025675

Start: 3919966

End: 3920886

Strand: Reverse

Name: pdxS

Synonym: nfa37050

Alternate gene names: 54025675

Gene position: 3920886-3919966 (Counterclockwise)

Preceding gene: 54025676

Following gene: 54025674

Centisome position: 65.12

GC content: 68.84

Gene sequence:

>921_bases
ATGACTCAGGAGTTTGCCGTGACCACGCCCGAGACCACCCAGACCGTCGGCACCGCCCGCGTGAAGCGCGGCATGGCCGA
GATGCTCAAGGGTGGGGTGATCATGGATGTCGTCACCCCGGAGCAGGCCAAGATCGCCGAGGACGCCGGCGCGGTCGCGG
TGATGGCGCTCGAGCGCGTGCCCGCCGACATCCGCGCGCAGGGCGGCGTGTCGCGGATGAGCGATCCGGACATGATCGAC
GGCATCATCAACGCCGTCTCGATTCCGGTCATGGCCAAGGCCCGCATCGGTCACTTCGTGGAGGCGCAGATCCTGCAGAG
CCTCGGGGTCGACTACATCGACGAGTCCGAGGTGCTCACCCCCGCCGACTACACCAACCACATCGACAAGTGGCAGTTCA
CCGTGCCGTTCGTGTGCGGCGCCACCAACCTGGGCGAGGCGCTGCGCCGCATCACCGAGGGTGCGGCGATGATCCGCTCC
AAGGGCGAGGCGGGCACCGGTGACGTCTCCAACGCCACCACCCACATGCGCAAGATCCGCCAGGAGATCCGCAAGCTGGC
CGCGCTGCCCGAGGACGAGCTGTACGTGGCCGCCAAGGAGCTCCAGGCGCCCTACGAACTGGTCCGCGAGGTCGCCGAGA
CCGGCAAACTGCCGGTCGTGCTGTTCACCGCCGGCGGTATCGCCACCCCCGCCGACGCGGCGATGATGATGCAGCTCGGC
GCCGAGGGCGTGTTCGTCGGCTCCGGCATCTTCAAGTCCGGCAACCCGGCCCAGCGCGCCGAGGCCATCGTCAAGGCCAC
CACCTTCTACGACGACCCGGACGTGCTCGCCAAGGTGTCGCGTGGCCTGGGCGAGGCGATGGTCGGCATCAACGTGGAGG
AGATCCCGCAGCCGCACCGGCTCGCTGAGCGCGGCTGGTGA

Upstream 100 bases:

>100_bases
CTGCGACACCAGGCCAGTGGTGCTCGACTGGCTATCAAGTGGCATTCCGGCCGCGCCTAGAATTGTGTCGTTTCCCGACC
GAGCGACCCGATTGGCGCAC

Downstream 100 bases:

>100_bases
TCGGGACCGGGATGAACGGGCCCGGGCATCGCACGGGCTAATCTCAGCGCATGGCGACCATCGAAGAGGCACTGGAGATC
GAACGCCTCGAGCGGGACAT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTQEFAVTTPETTQTVGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMID
GIINAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTNHIDKWQFTVPFVCGATNLGEALRRITEGAAMIRS
KGEAGTGDVSNATTHMRKIRQEIRKLAALPEDELYVAAKELQAPYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLG
AEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEEIPQPHRLAERGW

Sequences:

>Translated_306_residues
MTQEFAVTTPETTQTVGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMID
GIINAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTNHIDKWQFTVPFVCGATNLGEALRRITEGAAMIRS
KGEAGTGDVSNATTHMRKIRQEIRKLAALPEDELYVAAKELQAPYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLG
AEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEEIPQPHRLAERGW
>Mature_305_residues
TQEFAVTTPETTQTVGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERVPADIRAQGGVSRMSDPDMIDG
IINAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLTPADYTNHIDKWQFTVPFVCGATNLGEALRRITEGAAMIRSK
GEAGTGDVSNATTHMRKIRQEIRKLAALPEDELYVAAKELQAPYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLGA
EGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEEIPQPHRLAERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=64.6048109965636, Blast_Score=383, Evalue=1e-107,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=64.9659863945578, Blast_Score=368, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=64.6258503401361, Blast_Score=367, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_NOCFA (Q5YTD8)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_119917.1
- ProteinModelPortal:   Q5YTD8
- SMR:   Q5YTD8
- GeneID:   3108180
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa37050
- NMPDR:   fig|247156.1.peg.3610
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- ProtClustDB:   PRK04180
- BioCyc:   NFAR247156:NFA37050-MONOMER
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 32722; Mature: 32591

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEFAVTTPETTQTVGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERV
CCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCHHHHHHHHHC
PADIRAQGGVSRMSDPDMIDGIINAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLT
CHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PADYTNHIDKWQFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIR
CCHHHCCCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QEIRKLAALPEDELYVAAKELQAPYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLG
HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC
AEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEEIPQPHR
CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHH
LAERGW
HHHCCC
>Mature Secondary Structure 
TQEFAVTTPETTQTVGTARVKRGMAEMLKGGVIMDVVTPEQAKIAEDAGAVAVMALERV
CCCEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCHHHHHHHHHC
PADIRAQGGVSRMSDPDMIDGIINAVSIPVMAKARIGHFVEAQILQSLGVDYIDESEVLT
CHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PADYTNHIDKWQFTVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSNATTHMRKIR
CCHHHCCCCCEEEEECEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
QEIRKLAALPEDELYVAAKELQAPYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLG
HHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC
AEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEEIPQPHR
CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHH
LAERGW
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA